Construct: ORF ccsbBroad304_08451

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF012757.1_s304c1, BRDN0000410080
Derived from:
ccsbBroadEn_08451
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
FAM118A (55007)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_08451
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 55007 FAM118A family with sequence simila... NM_001104595.2 99.7% 99.4% 385G>C;420G>A;716G>A
2 human 55007 FAM118A family with sequence simila... NM_001349913.1 99.7% 99.4% 385G>C;420G>A;716G>A
3 human 55007 FAM118A family with sequence simila... NM_017911.4 99.7% 99.4% 385G>C;420G>A;716G>A
4 human 55007 FAM118A family with sequence simila... NM_001349914.1 99.4% 99.1% (many diffs)
5 human 55007 FAM118A family with sequence simila... NM_001349916.1 95.9% 95.6% (many diffs)
6 human 55007 FAM118A family with sequence simila... NM_001349915.1 79.1% 78.9% 300_301ins222;494G>A
7 human 55007 FAM118A family with sequence simila... XM_017028843.1 76.1% 76% 1_42del;342_343ins222;536G>A
8 human 55007 FAM118A family with sequence simila... XM_017028842.1 75.9% 75.8% (many diffs)
9 human 55007 FAM118A family with sequence simila... XM_017028844.1 73% 72.8% (many diffs)
10 human 55007 FAM118A family with sequence simila... XM_017028850.1 59.6% 59.5% (many diffs)
11 human 55007 FAM118A family with sequence simila... XM_017028851.1 59.6% 59.5% (many diffs)
12 human 55007 FAM118A family with sequence simila... XM_017028852.1 59.6% 59.5% (many diffs)
13 human 55007 FAM118A family with sequence simila... XM_017028846.1 59.5% 59.4% (many diffs)
14 human 55007 FAM118A family with sequence simila... XM_017028847.2 59.5% 59.4% (many diffs)
15 human 55007 FAM118A family with sequence simila... XM_017028848.1 59.5% 59.4% (many diffs)
16 human 55007 FAM118A family with sequence simila... XM_017028849.1 59.5% 59.4% (many diffs)
17 human 55007 FAM118A family with sequence simila... XM_017028858.1 58.1% 50.5% (many diffs)
18 human 55007 FAM118A family with sequence simila... XM_017028857.1 58% 50.4% (many diffs)
19 human 55007 FAM118A family with sequence simila... XM_017028841.1 57.8% 57.6% (many diffs)
20 human 55007 FAM118A family with sequence simila... XM_011530247.3 57.6% 57.5% (many diffs)
21 human 55007 FAM118A family with sequence simila... XM_017028845.1 57.6% 57.5% (many diffs)
22 human 55007 FAM118A family with sequence simila... XM_024452254.1 56% 48.6% (many diffs)
23 human 55007 FAM118A family with sequence simila... XM_011530256.1 55.8% 48.5% (many diffs)
24 human 55007 FAM118A family with sequence simila... XM_024452255.1 54.6% 47.9% (many diffs)
25 human 55007 FAM118A family with sequence simila... XM_017028861.1 54.2% 54% 0_1ins489;227G>A
26 human 55007 FAM118A family with sequence simila... XR_001755254.1 42.5% (many diffs)
27 human 55007 FAM118A family with sequence simila... XM_011530254.3 40.9% 40.2% (many diffs)
28 human 55007 FAM118A family with sequence simila... XM_024452256.1 39.2% 38.2% (many diffs)
29 human 55007 FAM118A family with sequence simila... XM_024452257.1 39.2% 38.2% (many diffs)
30 human 55007 FAM118A family with sequence simila... XR_001755255.1 28.7% (many diffs)
31 human 55007 FAM118A family with sequence simila... XM_017028856.2 28.6% 23.9% (many diffs)
32 human 55007 FAM118A family with sequence simila... XR_002958707.1 28.6% (many diffs)
33 human 55007 FAM118A family with sequence simila... XR_001755256.1 27.6% (many diffs)
34 human 55007 FAM118A family with sequence simila... NR_146323.1 27.5% (many diffs)
35 human 55007 FAM118A family with sequence simila... XR_002958708.1 23.1% (many diffs)
36 human 55007 FAM118A family with sequence simila... XR_002958705.1 19.8% (many diffs)
37 human 55007 FAM118A family with sequence simila... XR_002958706.1 19.2% (many diffs)
38 human 55007 FAM118A family with sequence simila... XR_002958709.1 19.1% (many diffs)
39 mouse 73225 Fam118a family with sequence simila... NM_133750.4 86.7% 91.8% (many diffs)
40 mouse 73225 Fam118a family with sequence simila... XM_006521483.2 86.7% 91.8% (many diffs)
41 mouse 73225 Fam118a family with sequence simila... XM_017316757.1 86.5% 91.6% (many diffs)
42 mouse 73225 Fam118a family with sequence simila... XM_006521482.3 85% 90.1% (many diffs)
43 mouse 73225 Fam118a family with sequence simila... XM_006521481.3 84.8% 89.8% (many diffs)
44 mouse 73225 Fam118a family with sequence simila... XM_006521478.3 83.4% 88% (many diffs)
45 mouse 73225 Fam118a family with sequence simila... XM_006521479.3 83.4% 88% (many diffs)
46 mouse 73225 Fam118a family with sequence simila... XM_006521480.3 83.4% 88% (many diffs)
47 mouse 73225 Fam118a family with sequence simila... XM_011245743.2 82.1% 86.5% (many diffs)
48 mouse 73225 Fam118a family with sequence simila... XM_006521474.3 81.9% 86.4% (many diffs)
49 mouse 73225 Fam118a family with sequence simila... XM_006521475.3 81.9% 86.4% (many diffs)
50 mouse 73225 Fam118a family with sequence simila... XM_006521476.3 81.9% 86.4% (many diffs)
51 mouse 73225 Fam118a family with sequence simila... XR_001781571.1 33.2% (many diffs)
52 mouse 73225 Fam118a family with sequence simila... XR_384052.3 32% (many diffs)
53 mouse 73225 Fam118a family with sequence simila... XR_001781570.1 31% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1137
ORF length:
1071
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgga ttcagtggaa aagacaacaa atagaagtga acaaaaatcc agaaagtttt
121taaaaagcct catccggaaa cagccccagg aactgctcct ggttatcggg actggcgtca
181gcgcagcagt ggcccccgga atccctgccc tttgctcgtg gagaagctgc atcgaggccg
241tcatcgaggc tgcagagcag ctggaggtgc tgcaccccgg agacgtcgcc gagttccgga
301ggaaagtgac aaaggaccgg gacctgttgg ttgtcgccca tgatctgatc cggaagatgt
361cacctcgcac aggcgatgcc aagcccagct tcttccagga ctgcctgatg gaggtgtttg
421acgacctgga gcagcacatc cggagtcctc tggtgctgca gtcgatcctc agcctgatgg
481acagaggcgc catggtcctg accaccaact atgacaacct gctggaggcc tttggccggc
541ggcagaacaa gcccatggag tccctggact tgaaggacaa gaccaaggtc cttgaatggg
601caagagggca catgaagtac ggcgtcctcc acattcacgg cctctacacg gacccctgcg
661gggtggtgct ggacccatcg gggtataaag acgtcactca agacgcagaa gtcatggaag
721tcctccagaa cttataccgc accaagtcct ttctgtttgt gggctgtggg gagacccttc
781atgatcagat attccaggcc ctctttcttt actccgtgcc gaataaggtg gatttggagc
841actacatgct tgtgctgaag gagaatgaag accatttctt taagcatcag gcagatatgc
901ttctgcacgg aatcaaagtt gtatcctacg gggactgttt tgaccacttt ccaggatatg
961tgcaagacct tgccactcag atctgcaaac agcaaagccc agatgctgat cgcgtggaca
1021gcaccacatt attgggtaat gcatgccagg actgtgcaaa gaggaagtta gaagagaatg
1081gaattgaagt ttcaaaaaaa cgcacacaat cagatactga tgatgctgga gggtcttgcc
1141caactttctt gtacaaagtg gttggtaagc ctatccctaa ccctctcctc ggtctcgatt
1201ctacgtagta atgagctagc gctaaccggt ggcgcgttaa gtcgacaatc aacctctgga
1261tta

Download FASTA (ORF) (Full)