Construct: ORF ccsbBroad304_08497

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016357.1_s304c1, BRDN0000409286
Derived from:
ccsbBroadEn_08497
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
YY1AP1 (55249)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_08497
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 55249 YY1AP1 YY1 associated protein 1 NM_001198899.1 99.9% 99.8% 1487C>T
2 human 55249 YY1AP1 YY1 associated protein 1 NM_001198900.1 99.9% 99.8% 1487C>T
3 human 55249 YY1AP1 YY1 associated protein 1 NM_018253.3 99.9% 99.8% 1487C>T
4 human 55249 YY1AP1 YY1 associated protein 1 NM_001198901.1 98.4% 98.4% 1_33del;1520C>T
5 human 55249 YY1AP1 YY1 associated protein 1 NM_001198902.1 98.4% 98.4% 1_33del;1520C>T
6 human 55249 YY1AP1 YY1 associated protein 1 NM_139119.2 98.4% 98.4% 1_33del;1520C>T
7 human 55249 YY1AP1 YY1 associated protein 1 NM_001198905.1 95.8% 95.7% 1_33del;728_729ins60;1460C>T
8 human 55249 YY1AP1 YY1 associated protein 1 NM_139121.2 92.5% 92.4% 0_1ins165;1322C>T
9 human 55249 YY1AP1 YY1 associated protein 1 NM_139118.2 88% 87.9% 1_231del;926_927ins60;1658C>T
10 human 55249 YY1AP1 YY1 associated protein 1 NM_001198903.1 83.1% 83.1% 1_447del;1934C>T
11 human 55249 YY1AP1 YY1 associated protein 1 NM_001198904.1 80.9% 80.8% 1_447del;1142_1143ins60;1874C>T
12 human 54856 GON4L gon-4 like NM_001282861.2 46.5% 44.9% (many diffs)
13 human 54856 GON4L gon-4 like NM_032292.6 46.5% 44.9% (many diffs)
14 human 55249 YY1AP1 YY1 associated protein 1 NM_001198906.2 41.3% 39% 1_231del;1193_1212del;1272_1273ins1196
15 human 54856 GON4L gon-4 like XM_005245284.3 34.4% 33.2% (many diffs)
16 human 54856 GON4L gon-4 like XM_011509659.2 34.4% 33.2% (many diffs)
17 human 54856 GON4L gon-4 like NM_001282858.2 31.7% 30.6% (many diffs)
18 human 54856 GON4L gon-4 like XM_006711393.3 31.7% 30.6% (many diffs)
19 human 54856 GON4L gon-4 like XM_006711394.4 31.7% 30.6% (many diffs)
20 human 54856 GON4L gon-4 like NM_001282856.1 31.7% 30.6% (many diffs)
21 human 54856 GON4L gon-4 like NM_001282860.1 31.7% 30.6% (many diffs)
22 human 54856 GON4L gon-4 like XM_005245286.3 31.5% 30.4% (many diffs)
23 human 54856 GON4L gon-4 like XM_011509658.2 30.5% 29.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2283
ORF length:
2217
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggg attctccaac atggaagatg atggcccaga agaggaggag cgtgtggctg
121agcctcaagc taactttaac acccctcaag ctctacggtt tgaggaacta ctggccaacc
181tactaaatga acaacatcag atagcgaagg aactatttga acagctgaag atgaagaaac
241cttcagccaa acagcagaag gaggtagaga aggttaaacc ccagtgtaag gaagttcatc
301agaccctgat tctggaccca gcacaaagga agagactcca gcagcagatg cagcagcatg
361ttcagctctt gacacaaatc caccttcttg ccacctgcaa ccccaatctc aatccggagg
421ccagtagcac caggatatgt cttaaagagc tgggaacctt tgctcaaagc tccatcgccc
481ttcaccatca gtacaacccc aagtttcaga ccctgttcca accctgtaac ttgatgggag
541ctatgcagct gattgaagac ttcagcacac atgtcagcat tgactgcagc cctcataaaa
601ctgtcaagaa gactgccaat gaatttccct gtttgccaaa gcaagtggct tggatcctgg
661ccacaagcaa ggttttcatg tatccagagt tacttccagt gtgttccctg aaggcaaaga
721atccccagga taagatcctc ttcaccaagg ctgaggacaa tttgttagct ttaggactga
781agcattttga agggactgag tttcttaacc ctctaatcag caagtacctt ctaacctgca
841agactgcccg ccaactgaca gtgagaatca agaacctcaa catgaacaga gctcctgaca
901acatcattaa attttataag aagaccaaac agctgccagt cctaggaaaa tgctgtgaag
961agatccagcc acatcagtgg aagccaccta tagagagaga agaacaccgg ctcccattct
1021ggttaaaggc cagtctgcca tccatccagg aagaactgcg gcacatggct gatggtgcta
1081gagaggtagg aaatatgact ggaaccactg agatcaactc agatcaaggc ctagaaaaag
1141acaactcaga gttggggagt gaaactcggt acccactgct attgcctaag ggtgtagtcc
1201tgaaactgaa gccagttgcc gaccgtttcc ccaagaaggc ttggagacag aagcgttcat
1261cagtcctgaa acccctcctt atccaaccca gcccctctct ccagcccagc ttcaaccctg
1321ggaaaacacc agcccaatca actcattcag aagcccctcc gagcaaaatg gtgctccgga
1381ttcctcaccc aatacagcca gccactgttt tacagacagt tccaggtgtc cctccactgg
1441gggtcagtgg aggtgagagt tttgagtctc ctgcagcact gcctgctatg ccccctgagg
1501ccaggacaag cttccctctg tctgagtccc agactttgct ctcttctgcc cttgtgccca
1561aggtaatgat gccctcccct gcctcttcca tgtttcgaaa gccatatgtg agacggagac
1621cctcaaaaag aaggggagcc agggcctttc gctgtatcaa acctgcccct gttatccacc
1681ctgcatctgt tatcttcact gttcctgcta ccactgtgaa gattgtgagc cttggcggtg
1741gctgtaacat gatccagcct gtcaatgcgg ctgtggccca gagtccccag actattccca
1801tcgccaccct cttggttaac cctacttcct tcccctgtcc attgaaccag ccccttgtgg
1861cctcctctgt ctcaccctta attgtttctg gcaattctgt gaatcttcct ataccatcca
1921cccctgaaga taaggcccac atgaatgtgg acattgcttg tgctgtggct gatggggaaa
1981atgcctttca gggcctagaa cccaaattag agccccagga actatctcct ctctctgcta
2041ctgttttccc caaagtggaa catagcccag ggcctccacc agtcgataaa cagtgccaag
2101aaggattgtc agagaacagt gcctatcgct ggaccgttgt gaaaacagag gagggaaggc
2161aagctctgga gccgctccct cagggcatcc aggagtctct aaacaactct tcccctgggg
2221atttagagga agttgtcaag atggaacctg aagatgctac agaggaaatc agtggatttc
2281tttgcccaac tttcttgtac aaagtggttg gtaagcctat ccctaaccct ctcctcggtc
2341tcgattctac gtagtaatga gctagcgcta accggtggcg cgttaagtcg acaatcaacc
2401tctggatta

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