Construct: ORF ccsbBroad304_08565
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF017606.1_s304c1, BRDN0000462315
- Derived from:
- ccsbBroadEn_08565
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- YEATS2 (55689)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_08565
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 55689 | YEATS2 | YEATS domain containing 2 | NM_001351369.1 | 99.9% | 99.8% | 1786G>T;1912G>T;3747C>T |
| 2 | human | 55689 | YEATS2 | YEATS domain containing 2 | NM_018023.5 | 99.9% | 99.8% | 1786G>T;1912G>T;3747C>T |
| 3 | human | 55689 | YEATS2 | YEATS domain containing 2 | XM_017006810.1 | 99.9% | 99.8% | 1786G>T;1912G>T;3747C>T |
| 4 | human | 55689 | YEATS2 | YEATS domain containing 2 | NM_001351370.1 | 99.8% | 99.7% | (many diffs) |
| 5 | human | 55689 | YEATS2 | YEATS domain containing 2 | XM_005247598.5 | 99.8% | 99.7% | (many diffs) |
| 6 | human | 55689 | YEATS2 | YEATS domain containing 2 | XM_006713688.3 | 99.8% | 99.7% | (many diffs) |
| 7 | human | 55689 | YEATS2 | YEATS domain containing 2 | XM_017006811.2 | 96.1% | 96% | (many diffs) |
| 8 | human | 55689 | YEATS2 | YEATS domain containing 2 | XM_011512965.1 | 96% | 95.9% | (many diffs) |
| 9 | human | 55689 | YEATS2 | YEATS domain containing 2 | NM_001351371.2 | 72.5% | 72.4% | (many diffs) |
| 10 | human | 55689 | YEATS2 | YEATS domain containing 2 | XM_011512966.1 | 72.5% | 72.3% | (many diffs) |
| 11 | human | 55689 | YEATS2 | YEATS domain containing 2 | XM_017006814.1 | 71% | 71% | (many diffs) |
| 12 | human | 55689 | YEATS2 | YEATS domain containing 2 | XM_024453638.1 | 71% | 71% | (many diffs) |
| 13 | human | 55689 | YEATS2 | YEATS domain containing 2 | XR_427369.3 | 64.1% | (many diffs) | |
| 14 | mouse | 208146 | Yeats2 | YEATS domain containing 2 | NM_001145930.1 | 84.2% | 86.3% | (many diffs) |
| 15 | mouse | 208146 | Yeats2 | YEATS domain containing 2 | XM_006521902.3 | 84.2% | 86.3% | (many diffs) |
| 16 | mouse | 208146 | Yeats2 | YEATS domain containing 2 | XM_006521903.3 | 84% | 86.1% | (many diffs) |
| 17 | mouse | 208146 | Yeats2 | YEATS domain containing 2 | XM_006521904.3 | 80.9% | 82.3% | (many diffs) |
| 18 | mouse | 208146 | Yeats2 | YEATS domain containing 2 | NM_001033237.2 | 80.7% | 82.6% | (many diffs) |
| 19 | mouse | 208146 | Yeats2 | YEATS domain containing 2 | XM_006521905.3 | 78.2% | 80.6% | (many diffs) |
| 20 | mouse | 208146 | Yeats2 | YEATS domain containing 2 | XR_384540.3 | 76.3% | (many diffs) | |
| 21 | mouse | 208146 | Yeats2 | YEATS domain containing 2 | XR_384537.3 | 67.7% | (many diffs) | |
| 22 | mouse | 208146 | Yeats2 | YEATS domain containing 2 | XR_384538.3 | 57.8% | (many diffs) | |
| 23 | mouse | 208146 | Yeats2 | YEATS domain containing 2 | XR_001781806.1 | 56.1% | (many diffs) | |
| 24 | mouse | 208146 | Yeats2 | YEATS domain containing 2 | XR_001781807.1 | 55.6% | (many diffs) | |
| 25 | mouse | 208146 | Yeats2 | YEATS domain containing 2 | NM_001145931.1 | 19.5% | 20.1% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 4335
- ORF length:
- 4266
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcaccat gtctggaatc aagcgaacca tcaaagaaac cgaccctgat tacgaggatg 121 tatctgtggc ccttccaaat aagcggcata aagcaattga gaattcagct cgagatgctg 181 ctgtgcagaa gattgagact attatcaaag aacagtttgc tcttgaaatg aagaataagg 241 aacatgaaat tgaagtcatt gaccagcgac tgattgaagc aagaaggatg atggataaac 301 tgcgtgcctg cattgtagca aactactatg cttctgcagg tcttctaaaa gtttctgagg 361 gatcaaagac atgtgataca atggttttta atcatcctgc tatcaagaaa tttttggaat 421 caccatctag gtcatcatct cctgccaatc agagagcaga aacaccatca gccaatcatt 481 cagaaagtga ttctttatct cagcacaatg acttcttatc tgacaaagat aataacagca 541 atatggatat agaggaaaga ctctcaaaca acatggagca gagaccaagc cgaaatactg 601 gaagggatac ttctagaatt actggctccc ataaaacaga acagcggaat gctgatctca 661 cagatgagac ttcacgactt tttgtaaaga aaacaatagt agtgggcaat gtgtccaagt 721 atatacctcc ggataagagg gaagaaaatg accagtcaac tcataagtgg atggtatatg 781 tccgagggtc ccgtagagaa cccagcatta atcattttgt caagaaggtt tggttcttcc 841 ttcatcctag ctataaacca aatgaccttg tggaagttag agagcctcct tttcacctga 901 ccagaagagg ctggggtgag tttcccgtca gagttcaagt tcattttaag gacagccaga 961 acaagcggat agatatcata cataatctga agctggatag aacttatact ggcttgcaga 1021 ctcttggagc agagacggta gtggatgttg aactccatcg ccattctctc ggagaagact 1081 gtatctatcc tcagtcctcg gagtctgaca tctctgatgc ccctccatct ttgcctttga 1141 ccattccagc cccagtgaaa gcttcttcac caataaagca gtcacatgag ccagtacccg 1201 atacctctgt ggagaaagga ttcccagcta gcactgaagc tgaacgacac actccgtttt 1261 atgctttgcc atcttcattg gaaagaacac ccaccaaaat gactacatcc cagaaagtta 1321 ccttttgttc ccatggcaat tcagctttcc agccaatagc atcaagctgc aaaattgttc 1381 cacaaagtca ggttcctaat cctgagtcac ctggaaaatc cttccagccc atcaccatga 1441 gctgcaagat tgtgtcaggt tccccaatat caactccaag cccatcacca ttgcctcgaa 1501 ccccgacttc cactccagtc cacgtgaagc aaggcactgc cggctctgtt attaataatc 1561 cttatgttat catggacaag cagccggggc aggtgattgg agccaccact cccagtacag 1621 gaagtcctac aaacaagatc tccacggctt ctcaggtctc ccaaggaaca ggttcccctg 1681 ttcctaaaat tcatggaagt agttttgtaa catctactgt caagcaggag gattctttgt 1741 ttgcatctat gccacctctt tgcccaattg ggagtcaccc taaggttcaa agccccaaac 1801 ctataacagg aggacttgga gctttcacaa aagtgatcat caaacaggaa ccttgtgaag 1861 cccctcacgt gcccgcaaca ggagctgcca gccagtcacc actcccgcag tatgtgactg 1921 tgaaaggggg tcacatgata gctgtgtccc ctcaaaaaca ggtcataact cctggagaat 1981 ggattgccca gtcagcaaag gttcagccct ccaaggttgt cggggtacca gttgggtctg 2041 ctttaccttc aacagtgaag caggctgtgg cgatcagtgg tggccagatc ctggtagcca 2101 aggccagctc ttctgtctcc aaagcagttg ggccaaagca agttgtaacc caaggagttg 2161 ccaaagcaat tgtgagtgga ggtggaggaa ccattgttgc tcagccagtg cagaccttaa 2221 ccaaggccca ggttactgcc gctggtcctc agaagagtgg atcccagggt tcagtaatgg 2281 caacgttgca gctaccagcc actaatttgg ccaacttggc aaatttgcct cctggcacta 2341 aactctacct aactacaaac agcaagaacc cttcaggaaa aggaaaactg ctgctgatcc 2401 ctcaaggagc catcctgcga gctacgaaca atgctaatct ccagtctggc tcagctgcca 2461 gtggtgggag tggtgccgga ggaggaggag gaggaggagg aggaggcggc agtggcagcg 2521 gtggaggcgg cagcacagga ggaggaggag gaacagcagg aggaggaact caaagtactg 2581 ctggccctgg agggatatct cagcacctga cttacacatc ttacatcctc aagcaaactc 2641 cccagggcac atttttagtt ggccagccat caccccagac ttctggaaaa caactcacca 2701 ctgggtcagt ggtccaagga acactgggag tcagcacatc ttctgcacaa ggacaacaaa 2761 cgctaaaagt catctctgga cagaaaacca cattgtttac acaggcagcc catggaggac 2821 aggcatctct aatgaaaata tccgatagca ccttgaagac tgtgccagcc acctcacagc 2881 tctcgaagcc tggaaccaca atgctgagag tagcaggagg ggttatcaca actgccactt 2941 cccctgccgt ggccctctca gcaaacggtc ctgcacaaca gtctgaagga atggctcccg 3001 tgtcttcatc tacggtcagt tctgtaacga aaacttctgg gcagcagcaa gtgtgtgtga 3061 gccaggccac cgtgggaacc tgcaaggctg ccacccccac cgtcgtcagc gccacgtccc 3121 tcgtgcctac accaaacccc atctctggga aagccacagt atccggactg ttaaagattc 3181 actccagtca gtccagtccg cagcaggccg tcctgacgat tcccagccag ctcaaaccac 3241 tcagcgtaaa cacatctgga ggggtgcaga cgatcctgat gcctgtgaat aaagtggttc 3301 agtcattttc taccagcaag ccacctgcca ttctgcctgt agctgcccca actccagttg 3361 tccccagctc tgctccagca gctgttgcaa aagtgaagac tgaaccagaa acacctggac 3421 cgagttgcct ctctcaggag ggtcagacag cagtgaaaac agaagaaagt tctgagctgg 3481 gaaactatgt cattaagata gaccatttag aaactatcca gcaactccta actgcagtag 3541 taaagaagat tccattaatc actgcaaaaa gtgaagatgc cagctgcttt tctgcaaagt 3601 ctgtggagca gtactatggc tggaacattg gaaaaaggag agccgctgag tggcaaagag 3661 caatgacaat gcgaaaagtc ttacaagaaa tcctggagaa gaatccgaga tttcaccacc 3721 tgactcccct caaaaccaag cacatcgctc actggtgccg ctgtcatggc tacaccccac 3781 cggaccctga gagcctgagg aatgacgggg actctatcga ggacgtgctg acccagatcg 3841 acagcgagcc cgagtgccca tcatcattct cctctgctga caacctctgc cgcaaactgg 3901 aggacctgca acagttccag aaaagggaac ccgagaatga ggaggaggtg gacatcctca 3961 gcctctccga gccagtgaag ataaacatca agaaggagca ggaagagaaa caagaggaag 4021 tcaagttcta cctgccacca accccagggt ctgaatttat tggggatgtc acacagaaga 4081 ttgggatcac cctgcagccc gtggcactcc acaggaacgt gtatgcgtcc gtggtggagg 4141 acatgatcct gaaggctaca gaacagctgg tgaatgatat cctgagacag gctttggcag 4201 ttggatacca gacagcttct cacaacagga ttcccaaaga aattacagtg agtaatattc 4261 accaggccat ttgcaacatt ccttttctgg acttcctcac aaacaaacac atgggaatat 4321 tgaatgagga ccagttgcca actttcttgt acaaagtggt tggtaagcct atccctaacc 4381 ctctcctcgg tctcgattct acgtagtaat gagctagcgc taaccggtgg cgcgttaagt 4441 cgacaatcaa cctctggatt a