Construct: ORF ccsbBroad304_08611
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF015216.1_s304c1, BRDN0000401935
- Derived from:
- ccsbBroadEn_08611
- DNA Barcode:
- None
- Epitope Tag:
- V5 (not translated due to prior stop codon)
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- ERBIN (55914)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_08611
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 55914 | ERBIN | erbb2 interacting protein | NM_018695.4 | 99.7% | 88.7% | (many diffs) |
| 2 | human | 55914 | ERBIN | erbb2 interacting protein | NM_001253701.2 | 99.4% | 88.4% | (many diffs) |
| 3 | human | 55914 | ERBIN | erbb2 interacting protein | NM_001253698.2 | 97.9% | 90.4% | (many diffs) |
| 4 | human | 55914 | ERBIN | erbb2 interacting protein | NM_001253697.2 | 96.8% | 86.1% | (many diffs) |
| 5 | human | 55914 | ERBIN | erbb2 interacting protein | NM_001253699.2 | 96.3% | 85.7% | (many diffs) |
| 6 | human | 55914 | ERBIN | erbb2 interacting protein | XM_017009636.2 | 96% | 85.4% | (many diffs) |
| 7 | human | 55914 | ERBIN | erbb2 interacting protein | NM_001006600.2 | 94.7% | 92.8% | (many diffs) |
| 8 | human | 55914 | ERBIN | erbb2 interacting protein | XM_017009637.2 | 94.4% | 92.5% | (many diffs) |
| 9 | human | 55914 | ERBIN | erbb2 interacting protein | XM_005248554.3 | 93.6% | 83% | (many diffs) |
| 10 | human | 55914 | ERBIN | erbb2 interacting protein | XM_017009635.2 | 93.6% | 83% | (many diffs) |
| 11 | human | 55914 | ERBIN | erbb2 interacting protein | XM_005248555.4 | 93.3% | 82.8% | (many diffs) |
| 12 | human | 55914 | ERBIN | erbb2 interacting protein | XM_006714660.4 | 89.8% | 97.1% | (many diffs) |
| 13 | mouse | 59079 | Erbin | Erbb2 interacting protein | NM_001289473.1 | 85.5% | 76.7% | (many diffs) |
| 14 | mouse | 59079 | Erbin | Erbb2 interacting protein | NM_001289475.1 | 85% | 76.2% | (many diffs) |
| 15 | mouse | 59079 | Erbin | Erbb2 interacting protein | NM_001289474.1 | 83.1% | 82.5% | (many diffs) |
| 16 | mouse | 59079 | Erbin | Erbb2 interacting protein | NM_001005868.2 | 82.7% | 74% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 3756
- ORF length:
- 3687
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcaccat gactacaaaa cgaagtttgt ttgtgcggtt ggtaccatgt cgctgtctac 121 gaggggaaga ggagactgtc actactcttg attattctca ttgcagctta gaacaagttc 181 cgaaagagat ttttactttt gaaaaaacct tggaggaact ctatttagat gctaatcaga 241 ttgaagagct tccaaagcaa ctttttaact gtcagtcttt acacaaactg agtttgccag 301 acaatgattt aacaacgtta ccagcatcca ttgcaaacct tattaatctc agggaactgg 361 atgtcagcaa gaatggaata caggagtttc cagaaaatat aaaaaattgt aaagttttga 421 caattgtgga ggccagtgta aaccctattt ccaagctccc tgatggattt tctcagctgt 481 taaacctaac ccagttgtat ctgaatgatg cttttcttga gttcttgcca gcaaattttg 541 gcagattaac taaactccaa atattagagc ttagagaaaa ccagttaaaa atgttgccta 601 aaactatgaa tagactgacc cagctggaaa gattggattt gggaagtaac gaattcacgg 661 aagtgcctga agtacttgag caactaagtg gattgaaaga gttttggatg gatgctaata 721 gactgacttt tattccaggg tttattggta gtttgaaaca gctcacatat ttggatgttt 781 ctaaaaataa tattgaaatg gttgaagaag gaatttcaac atgtgaaaac cttcaagacc 841 tcctattatc aagcaattca cttcagcagc ttcctgagcc tattggttcg ttgaagaata 901 taacaacgct taaaatagat gaaaaccagt taatgtatct gccagactct ataggagggt 961 taatatcagt agaagaactg gattgtagtt tcaatgaagt tgaagctttg ccttcatcta 1021 ttgggcagct tactaactta agaacttttg ctgctgatca taattactta caacagttgc 1081 ccccagagat tggaagctgg aaaaatataa ctgtgctgtt tctccattcc aataaacttg 1141 agacacttcc agaggaaatg ggtgatatgc aaaaattaaa agtcattaat ttaagtgata 1201 atagattaaa gaatttaccc tttagcttta caaagctaca gcaattgaca gctatgtggc 1261 tctcagataa tcagtccaaa cccctgatac ctcttcaaaa agaaactgat tcagagaccc 1321 agaaaatggt gcttaccaac tacatgttcc ctcaacagcc aaggactgag gatgttatgt 1381 ttatatcaga taatgaaagt tttaaccctt cattgtggga ggaacagagg aaacagcggg 1441 ctcaagttgc atttgaatgt gatgaagaca aagatgaaag ggaggcacct cccagggagg 1501 gaaatttaaa aagatatcca acaccatacc cagatgagct taagaatatg gtcaaaactg 1561 ttcaaaccat tgtacataga ttaaaagatg aagagaccaa tgaagactca ggaagagatt 1621 tgaaaccaca tgaagatcaa caagatataa ataaagatgt gggtgtgaag acctcggaaa 1681 gtactactac agtaaaaagc aaagttggtg aaagagaaaa atatatgata ggaaactctg 1741 tacagaagat cagtgaacct gaagctgaga ttagtcctgg gagtttacca gtgactgcaa 1801 atatgaaagc ctctgagaac ttgaagcata ttgttaacca tgatgatgtt tttgaggaat 1861 ctgaagaact ttcttctgat gaagagatga aaatggcgga gatgcgacca ccattaattg 1921 aaacctctat taaccagcca aaagtcgtag cacttagtaa taacaaaaaa gatgatacaa 1981 aggaaacaga ttctttatca gatgaagtta cacacaatag caatcagaat aacagcaatt 2041 gttcttctcc atctcggatg tctgattcag tttctcttaa tactgatagt agtcaagaca 2101 cctcactctg ctctccagtg aaacaaactc atattgatat taattccaaa atcaggcaag 2161 aagatgaaaa ttttaacagc cttttacaaa atggagatat tttaaacagt tcaacagagg 2221 aaaagttcaa agctcatgat aaaaaagatt ttaacttacc tgaatatgat ttgaatgttg 2281 aagagcgatt agttctaatt gagaaaagtg ttgactcaac agccacagct gatgacactc 2341 acaaattaga tcatatcaat atgaatctta ataaacttat aactaatgat acattccaac 2401 cagagatcat ggaaagatca aaaacacagg atattgtgct tggaacaagc tttttaagca 2461 ttaattctaa agaggaaact gagcacttgg aaaatggaaa caagtatcct aatttggaat 2521 ccgtaaataa ggtaaatgga cattctgagg aaacttccca gtctcctaat aggactgaac 2581 cacatgacag tgattgttct gttgacttag gtatttccaa aagcactgaa gatctctccc 2641 ctcagaaaag tggtccagtt ggatctgttg tgaaatctca tagcataact aatatggaga 2701 ttggagggct aaaaatctat gatattctta gtgataatgg acctcagcag ccaagtacaa 2761 ccgttaaaat cacatctgct gttgatggaa aaaatatagt caggagcaag tctgccacac 2821 tgttgtatga tcaaccattg caggtattta ctggttcttc ctcatcttct gatttaatat 2881 caggaacaaa ggcaattttc aagtttgatt caaatcataa tcccgaagag ccaaatataa 2941 taagaggccc cacaagtggc ccacaatctg cacctcaaat atatggtcct ccacagtata 3001 atatccaata cagtagcagt gctgcagtca aagacacttt gtggcactcc aaacaaaatc 3061 cccaaataga ccatgccagt tttcctcctc agctccttcc tagatcagag agcacagaaa 3121 atcaaagtta tgctaaacat tctgccaata tgaatttctc taatcataac aatgttcgag 3181 ctaatactgc ataccattta catcagagac ttggcccagc aagacatggg gaaatgtggg 3241 ccatctcacc aaacgaccga cttattcctg cagtaactcg aagtacaatc cagcgacaaa 3301 gtagtgtgtc ctccacagcc tctgtaaatc ttggtgatcc aggctctaca aggcgggctc 3361 agattcctga aggagattat ttatcataca gagagttcca ctcagcggga agaactcctc 3421 caatgatgcc aggatcacag agaccccttt ctgcacgaac atacagcata gatggtccaa 3481 atgcatcaag acctcagagt gctcgaccct ctattaatga aataccagag agaactatgt 3541 cagttagtga tttcaattat tcacggacta gtccttcaaa aagaccaaat gcaagggttg 3601 gttctgagca ttctttatta gatcctccag gaaaaagtaa agttcctcgt gactggagag 3661 aacaagtact tcgacatatt GGAGCCAAAA AGTTAGAAAA GATGCCTTTG AGTAATGGAC 3721 AGATGGGCCC AGCCTCTCAG GCCTCCGGCA AATTATAGTC AAATACATCA CCCCCCTCAG 3781 GCATCTGTGG CAAGGCATCC CTCTAGAGAA CAACTAATTG ATTACTTGAT GCTGAAAGTG 3841 GCCCACCAGC CTCCATATAC ACAGCCCCAT TGTTCTCCTA GACAAGGCCA TGAACTGGCA 3901 AAACAAGAGA TTCGAGTGAG GGTTGAAAGG GATCCAGAAC TTGGATTTAG CATATCAGGT 3961 GGTGTCGGGG GTAGAGGAAA CCCATTCAGA CCTGATGATG ATGGTATATT TGTAACAAGG 4021 GTACAACCTG AAGGACCAGC ATCAAAATTA CTGCAGCCAG GTGATAAAAT TATCCAGGCT 4081 AATGGCTACA GTTTTATAAA TATTGAACAT GGACAAGCAG TGTCCTTGCT AAAAACTTTC 4141 CAGAATACAG TTGAACTCAT CATTGTACGA GAAGTTTCCT CATTGCCAAC TTTCTTGTAC 4201 aaagtggttg gtaagcctat ccctaaccct ctcctcggtc tcgattctac gtagtaatga 4261 gctagcgcta accggtggcg cgttaagtcg acaatcaacc tctggatta