Construct: ORF ccsbBroad304_09321
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF010926.1_s304c1, BRDN0000407238
- Derived from:
- ccsbBroadEn_09321
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- NLRP12 (91662)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_09321
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 91662 | NLRP12 | NLR family pyrin domain con... | NM_144687.4 | 100% | 100% | |
| 2 | human | 91662 | NLRP12 | NLR family pyrin domain con... | NM_001277126.2 | 99.9% | 99.9% | 2073_2075delCAG |
| 3 | human | 91662 | NLRP12 | NLR family pyrin domain con... | XM_017027460.1 | 99.8% | 99.8% | 2073_2075delCAG;2927_2928insGTG |
| 4 | human | 91662 | NLRP12 | NLR family pyrin domain con... | XM_017027462.1 | 94.6% | 94.6% | 2072_2073ins171 |
| 5 | human | 91662 | NLRP12 | NLR family pyrin domain con... | NM_001277129.1 | 94.5% | 94.6% | 2394A>G;2755_2756ins171 |
| 6 | human | 91662 | NLRP12 | NLR family pyrin domain con... | XM_011527479.1 | 94.5% | 94.5% | 2073_2075delCAG;2417_2418ins171 |
| 7 | human | 91662 | NLRP12 | NLR family pyrin domain con... | XM_011527480.1 | 94.5% | 94.5% | 2073_2075delCAG;2758_2759ins171 |
| 8 | human | 91662 | NLRP12 | NLR family pyrin domain con... | XM_017027461.1 | 94.5% | 94.5% | 2073_2075delCAG;2928_2929ins171 |
| 9 | human | 91662 | NLRP12 | NLR family pyrin domain con... | XM_011527482.1 | 89.1% | 89.1% | 2073_2075delCAG;2584_2585ins342 |
| 10 | human | 91662 | NLRP12 | NLR family pyrin domain con... | XM_017027463.1 | 86.8% | 86.8% | 0_1ins417;1656_1658delCAG |
| 11 | human | 91662 | NLRP12 | NLR family pyrin domain con... | XM_017027464.1 | 86.8% | 86.8% | 0_1ins417;1656_1658delCAG |
| 12 | human | 91662 | NLRP12 | NLR family pyrin domain con... | XM_017027465.1 | 86.8% | 86.8% | 0_1ins417;1656_1658delCAG |
| 13 | human | 91662 | NLRP12 | NLR family pyrin domain con... | XM_017027466.1 | 86.8% | 86.8% | 0_1ins417;1656_1658delCAG |
| 14 | human | 91662 | NLRP12 | NLR family pyrin domain con... | XM_017027467.1 | 86.8% | 86.8% | 0_1ins417;1656_1658delCAG |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 3249
- ORF length:
- 3183
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatgct acgaaccgca ggcagggacg gcctctgtcg cctgtccacc tacttggaag 121 aactcgaggc tgtggaactg aagaagttca agttatacct ggggaccgcg acagagctgg 181 gagaaggcaa gatcccctgg ggaagcatgg agaaggccgg tcccctggaa atggcccagc 241 tgctcatcac ccacttcggg ccagaggagg cctggaggtt ggctctcagc acctttgagc 301 ggataaacag gaaggacctg tgggagagag gacagagaga ggacctggtg agggataccc 361 cacctggtgg cccgtcctca cttgggaacc agtcaacatg ccttctggaa gtctctcttg 421 tcactccaag aaaagatccc caggaaacct acagggacta tgtccgcagg aaattccggc 481 tcatggaaga ccgcaatgcg cgcctagggg aatgtgtcaa cctcagccac cggtacaccc 541 ggctcctgct ggtgaaggag cactcaaacc ccatgcaggt ccagcagcag cttctggaca 601 caggccgggg acacgcgagg accgtgggac accaggctag ccccatcaag atagagaccc 661 tctttgagcc agacgaggag cgccccgagc caccgcgcac cgtggtcatg caaggcgcgg 721 cagggatagg caagtccatg ctggcacaca aggtgatgct ggactgggcg gacgggaagc 781 tcttccaagg cagatttgat tatctcttct acatcaactg cagggagatg aaccagagtg 841 ccacggaatg cagcatgcaa gacctcatct tcagctgctg gcctgagccc agcgcgcctc 901 tccaggagct catccgagtt cccgagcgcc tccttttcat catcgacggc ttcgatgagc 961 tcaagccttc tttccacgat cctcagggac cctggtgcct ctgctgggag gagaaacggc 1021 ccacggagct gcttcttaac agcttaattc ggaagaagct gctccctgag ctatctttgc 1081 tcatcaccac acggcccacg gctttggaga agctccaccg tctgctggag caccccaggc 1141 atgtggagat cctgggcttc tctgaggcag aaaggaagga atacttctac aagtatttcc 1201 acaatgcaga gcaggcgggc caagtcttca attacgtgag ggacaacgag cctctcttca 1261 ccatgtgctt cgtccccctg gtgtgctggg tggtgtgtac ctgcctccag cagcagctgg 1321 agggtggggg gctgttgaga cagacgtcca ggaccaccac tgcagtgtac atgctctacc 1381 tgctgagtct gatgcaaccc aagccggggg ccccgcgcct ccagccccca cccaaccaga 1441 gagggttgtg ctccttggcg gcagatgggc tctggaatca gaaaatccta tttgaggagc 1501 aggacctccg gaagcacggc ctagacgggg aagacgtctc tgccttcctc aacatgaaca 1561 tcttccagaa ggacatcaac tgtgagaggt actacagctt catccacttg agtttccagg 1621 aattctttgc agctatgtac tatatcctgg acgaggggga gggcggggca ggcccagacc 1681 aggacgtgac caggctgttg accgagtacg cgttttctga aaggagcttc ctggcactca 1741 ccagccgctt cctgtttgga ctcctgaacg aggagaccag gagccacctg gagaagagtc 1801 tctgctggaa ggtctcgccg cacatcaaga tggacctgtt gcagtggatc caaagcaaag 1861 ctcagagcga cggctccacc ctgcagcagg gctccttgga gttcttcagc tgcttgtacg 1921 agatccagga ggaggagttt atccagcagg ccctgagcca cttccaggtg atcgtggtca 1981 gcaacattgc ctccaagatg gagcacatgg tctcctcgtt ctgtctgaag cgctgcagga 2041 gcgcccaggt gctgcacttg tatggcgcca cctacagcgc ggacggggaa gaccgcgcga 2101 ggtgctccgc aggagcgcac acgctgttgg tgcagctacc agagaggacc gttctgctgg 2161 acgcctacag tgaacatctg gcagcggccc tgtgcaccaa tccaaacctg atagagctgt 2221 ctctgtaccg aaatgccctg ggcagccggg gggtgaagct gctctgtcaa ggactcagac 2281 accccaactg caaacttcag aacctgaggc tgaagaggtg ccgcatctcc agctcagcct 2341 gcgaggacct ctctgcagct ctcatagcca ataagaattt gacaaggatg gatctcagtg 2401 gcaacggcgt tggattccca ggcatgatgc tgctttgcga gggcctgcgg catccccagt 2461 gcaggctgca gatgattcag ttgaggaagt gtcagctgga gtccggggct tgtcaggaga 2521 tggcttctgt gctcggcacc aacccacatc tggttgagtt ggacctgaca ggaaatgcac 2581 tggaggattt gggcctgagg ttactatgcc agggactgag gcacccagtc tgcagactac 2641 ggactttgtg gctgaagatc tgccgcctca ctgctgctgc ctgtgacgag ctggcctcaa 2701 ctctcagtgt gaaccagagc ctgagagagc tggacctgag cctgaatgag ctgggggacc 2761 tcggggtgct gctgctgtgt gagggcctca ggcatcccac gtgcaagctc cagaccctgc 2821 ggttgggcat ctgccggctg ggctctgccg cctgtgaggg tctttctgtg gtgctccagg 2881 ccaaccacaa cctccgggag ctggacttga gtttcaacga cctgggagac tggggcctgt 2941 ggttgctggc tgaggggctg caacatcccg cctgcagact ccagaaactg tggctggata 3001 gctgtggcct cacagccaag gcttgtgaga atctttactt caccctgggg atcaaccaga 3061 ccttgaccga cctttacctg accaacaacg ccctagggga cacaggtgtc cgactgcttt 3121 gcaagcggct gagccatcct ggctgcaaac tccgagtcct ctggttattt gggatggacc 3181 tgaataaaat gacccacagt aggttggcag cgcttcgagt aacaaaacct tatttggaca 3241 ttggctgctg cccaactttc ttgtacaaag tggttggtaa gcctatccct aaccctctcc 3301 tcggtctcga ttctacgtag taatgagcta gcgctaaccg gtggcgcgtt aagtcgacaa 3361 tcaacctctg gatta