Construct: ORF ccsbBroad304_09602
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF017784.1_s304c1, BRDN0000461612
- Derived from:
- ccsbBroadEn_09602
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- MPP7 (143098)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_09602
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 143098 | MPP7 | membrane palmitoylated prot... | NM_001318170.2 | 99.7% | 99.8% | (many diffs) |
| 2 | human | 143098 | MPP7 | membrane palmitoylated prot... | NM_173496.5 | 99.7% | 99.8% | (many diffs) |
| 3 | human | 143098 | MPP7 | membrane palmitoylated prot... | XM_011519337.2 | 99.7% | 99.8% | (many diffs) |
| 4 | human | 143098 | MPP7 | membrane palmitoylated prot... | XM_017015742.1 | 99.4% | 99.4% | (many diffs) |
| 5 | human | 143098 | MPP7 | membrane palmitoylated prot... | XM_017015741.1 | 83.5% | 79.1% | (many diffs) |
| 6 | human | 143098 | MPP7 | membrane palmitoylated prot... | XM_011519338.2 | 78.1% | 78.1% | (many diffs) |
| 7 | human | 143098 | MPP7 | membrane palmitoylated prot... | XM_005252369.3 | 55% | 55.2% | 15A>T;954_954delCins775 |
| 8 | human | 143098 | MPP7 | membrane palmitoylated prot... | XM_017015743.2 | 44.9% | 41% | (many diffs) |
| 9 | human | 143098 | MPP7 | membrane palmitoylated prot... | NR_134517.2 | 32.7% | (many diffs) | |
| 10 | human | 143098 | MPP7 | membrane palmitoylated prot... | NR_134518.2 | 31.7% | (many diffs) | |
| 11 | mouse | 75739 | Mpp7 | membrane protein, palmitoyl... | NM_001081287.2 | 88% | 92.7% | (many diffs) |
| 12 | mouse | 75739 | Mpp7 | membrane protein, palmitoyl... | XM_006526326.3 | 88% | 92.7% | (many diffs) |
| 13 | mouse | 75739 | Mpp7 | membrane protein, palmitoyl... | XM_017318007.1 | 88% | 92.7% | (many diffs) |
| 14 | mouse | 75739 | Mpp7 | membrane protein, palmitoyl... | XM_006526325.3 | 84.5% | 88.8% | (many diffs) |
| 15 | mouse | 75739 | Mpp7 | membrane protein, palmitoyl... | XM_011247025.2 | 84.4% | 88.6% | (many diffs) |
| 16 | mouse | 75739 | Mpp7 | membrane protein, palmitoyl... | XM_011247026.2 | 84.4% | 88.6% | (many diffs) |
| 17 | mouse | 75739 | Mpp7 | membrane protein, palmitoyl... | XM_011247027.2 | 84.4% | 88.6% | (many diffs) |
| 18 | mouse | 75739 | Mpp7 | membrane protein, palmitoyl... | XM_017318006.1 | 84.4% | 88.6% | (many diffs) |
| 19 | mouse | 75739 | Mpp7 | membrane protein, palmitoyl... | XM_006526327.2 | 80.6% | 84.5% | (many diffs) |
| 20 | mouse | 75739 | Mpp7 | membrane protein, palmitoyl... | NM_001161620.1 | 62.1% | 63.4% | (many diffs) |
| 21 | mouse | 75739 | Mpp7 | membrane protein, palmitoyl... | XM_017318009.1 | 47.9% | 49.8% | (many diffs) |
| 22 | mouse | 75739 | Mpp7 | membrane protein, palmitoyl... | XM_017318010.1 | 44.7% | 46.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1794
- ORF length:
- 1728
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatgcc agctttgtct acgggatctg ggagtgacac tggtctgtat gagctgttgg 121 ctgctctgcc agcccagctg cagccacatg tggatagcca ggaagacctg accttcctct 181 gggatatgtt tggtgaaaaa agcctgcatt cattggtaaa gattcatgaa aaactacact 241 actatgagaa gcagagtccg gtgcccattc tccatggtgc ggcggccttg gccgatgatc 301 tggccgaaga gcttcagaac aagccattaa acagtgagat cagagagctg ttgaaactac 361 tgtcaaaacc caatgtgaag gctttgctct ctgtacatga tactgtggct cagaagaatt 421 acgacccagt gttgcctcct atgcctgaag atattgacga tgaggaagac tcagtaaaaa 481 taatccgtct ggtcaaaaat agagaaccac tgggagctac cattaagaag gatgaacaga 541 ccggggcgat cattgtggcc agaatcatga gaggaggagc tgcagataga agtggtctta 601 ttcatgttgg tgatgaactt agggaagtca acgggatacc agtggaggat aaaaggcctg 661 aggaaataat acagattttg gctcagtctc agggagcaat tacatttaag attatacccg 721 gcagcaaaga ggagacacca tcaaaagaag gcaagatgtt tatcaaagcc ctctttgact 781 ataatcctaa tgaggataag gcaattccat gtaaggaagc tgggctttct ttcaaaaagg 841 gagatattct tcagattatg agccaagatg atgcaacttg gtggcaagcg aaacacgaag 901 ctgatgccaa ccccagggca ggcttgatcc cctcaaagca tttccaggaa aggagattgg 961 ctttgagacg accagaaata ttggttcagc ccctgaaagt ttccaacagg aaatcatctg 1021 gttttagaag aagttttcgt cttagtagaa aagataagaa aacaaataaa tccatgtatg 1081 aatgcaagaa gagtgatcag tacgacacag ctgacgtacc cacatacgaa gaagtgacac 1141 cgtatcggcg acaaactaat gaaaaataca gactcgttgt cttggttggt cccgtgggag 1201 tagggctgaa tgaactgaaa cgaaagctgc tgatcagtga cacacagcac tatggcgtga 1261 cagtgcccca taccaccaga gcaagaagaa gccaggagag tgatggtgtt gaatacattt 1321 tcatttccaa gcatttgttt gagacagatg tacaaaataa caagtttatt gaatatggag 1381 aatataaaaa caactactac ggcacaagta tagactcagt tcggtctgtc cttgctaaaa 1441 acaaagtttg tttgttggat gttcagcctc atacagtgaa gcatttaagg acactagaat 1501 ttaagcccta tgtgatattt ataaagcctc catcaataga gcgtttgaga gaaacaagaa 1561 aaaatgcaaa gattatttca agcagagatg accaaggtgc tgcaaaaccc ttcacagaag 1621 aagattttca agaaatgatt aaatctgcac agataatgga aagtcaatat ggtcatcttt 1681 ttgacaaaat tataataaat gatgacctca ctgtggcatt taatgagctc aaaacaactt 1741 ttgacaaatt agagacagag acccattggg tgccagtgag ctggttacat tcatacccaa 1801 ctttcttgta caaagtggtt ggtaagccta tccctaaccc tctcctcggt ctcgattcta 1861 cgtagtaatg agctagcgct aaccggtggc gcgttaagtc gacaatcaac ctctggatta