Construct: ORF ccsbBroad304_10808
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF016268.1_s304c1, BRDN0000407679
- Derived from:
- ccsbBroadEn_10808
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ESRRG (2104)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_10808
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 2104 | ESRRG | estrogen related receptor g... | XM_011509274.1 | 100% | 100% | |
| 2 | human | 2104 | ESRRG | estrogen related receptor g... | XM_011509275.1 | 100% | 100% | |
| 3 | human | 2104 | ESRRG | estrogen related receptor g... | XM_011509276.1 | 100% | 100% | |
| 4 | human | 2104 | ESRRG | estrogen related receptor g... | XM_011509277.1 | 100% | 100% | |
| 5 | human | 2104 | ESRRG | estrogen related receptor g... | XM_011509278.1 | 100% | 100% | |
| 6 | human | 2104 | ESRRG | estrogen related receptor g... | XM_011509279.1 | 100% | 100% | |
| 7 | human | 2104 | ESRRG | estrogen related receptor g... | XM_011509280.2 | 100% | 100% | |
| 8 | human | 2104 | ESRRG | estrogen related receptor g... | XM_017000631.2 | 100% | 100% | |
| 9 | human | 2104 | ESRRG | estrogen related receptor g... | XM_017000632.2 | 100% | 100% | |
| 10 | human | 2104 | ESRRG | estrogen related receptor g... | XM_017000633.1 | 100% | 100% | |
| 11 | human | 2104 | ESRRG | estrogen related receptor g... | XM_017000634.2 | 100% | 100% | |
| 12 | human | 2104 | ESRRG | estrogen related receptor g... | XM_017000635.1 | 100% | 100% | |
| 13 | human | 2104 | ESRRG | estrogen related receptor g... | XM_017000636.2 | 100% | 100% | |
| 14 | human | 2104 | ESRRG | estrogen related receptor g... | XM_017000637.1 | 100% | 100% | |
| 15 | human | 2104 | ESRRG | estrogen related receptor g... | XM_024453959.1 | 100% | 100% | |
| 16 | human | 2104 | ESRRG | estrogen related receptor g... | XM_024453960.1 | 100% | 100% | |
| 17 | human | 2104 | ESRRG | estrogen related receptor g... | XM_011509271.2 | 98.8% | 98.8% | 1_15del |
| 18 | human | 2104 | ESRRG | estrogen related receptor g... | XM_017000630.1 | 98.8% | 98.8% | 1_15del |
| 19 | human | 2104 | ESRRG | estrogen related receptor g... | NM_001134285.3 | 98.4% | 98.1% | 631_632ins21 |
| 20 | human | 2104 | ESRRG | estrogen related receptor g... | NM_001243509.2 | 98.4% | 98.1% | 631_632ins21 |
| 21 | human | 2104 | ESRRG | estrogen related receptor g... | NM_001243510.3 | 98.4% | 98.1% | 631_632ins21 |
| 22 | human | 2104 | ESRRG | estrogen related receptor g... | NM_001243511.3 | 98.4% | 98.1% | 631_632ins21 |
| 23 | human | 2104 | ESRRG | estrogen related receptor g... | NM_001243512.1 | 98.4% | 98.1% | 631_632ins21 |
| 24 | human | 2104 | ESRRG | estrogen related receptor g... | NM_001243513.1 | 98.4% | 98.1% | 631_632ins21 |
| 25 | human | 2104 | ESRRG | estrogen related receptor g... | NM_001243514.2 | 98.4% | 98.1% | 631_632ins21 |
| 26 | human | 2104 | ESRRG | estrogen related receptor g... | NM_001243515.2 | 98.4% | 98.1% | 631_632ins21 |
| 27 | human | 2104 | ESRRG | estrogen related receptor g... | NM_001243519.1 | 98.4% | 98.1% | 631_632ins21 |
| 28 | human | 2104 | ESRRG | estrogen related receptor g... | NM_001350122.2 | 98.4% | 98.1% | 631_632ins21 |
| 29 | human | 2104 | ESRRG | estrogen related receptor g... | NM_001350123.2 | 98.4% | 98.1% | 631_632ins21 |
| 30 | human | 2104 | ESRRG | estrogen related receptor g... | NM_001350124.2 | 98.4% | 98.1% | 631_632ins21 |
| 31 | human | 2104 | ESRRG | estrogen related receptor g... | NM_001350125.2 | 98.4% | 98.1% | 631_632ins21 |
| 32 | human | 2104 | ESRRG | estrogen related receptor g... | NM_206594.2 | 98.4% | 98.1% | 631_632ins21 |
| 33 | human | 2104 | ESRRG | estrogen related receptor g... | NM_206595.3 | 98.4% | 98.1% | 631_632ins21 |
| 34 | human | 2104 | ESRRG | estrogen related receptor g... | XM_017000638.2 | 98.4% | 98.1% | 631_632ins21 |
| 35 | human | 2104 | ESRRG | estrogen related receptor g... | XM_017000639.1 | 98.4% | 98.1% | 631_632ins21 |
| 36 | human | 2104 | ESRRG | estrogen related receptor g... | XM_017000641.1 | 98.4% | 98.1% | 631_632ins21 |
| 37 | human | 2104 | ESRRG | estrogen related receptor g... | XM_017000644.1 | 98.4% | 98.1% | 631_632ins21 |
| 38 | human | 2104 | ESRRG | estrogen related receptor g... | XM_017000645.1 | 98.4% | 98.1% | 631_632ins21 |
| 39 | human | 2104 | ESRRG | estrogen related receptor g... | XM_024453975.1 | 98.4% | 98.1% | 631_632ins21 |
| 40 | human | 2104 | ESRRG | estrogen related receptor g... | XM_024453979.1 | 98.4% | 98.1% | 631_632ins21 |
| 41 | human | 2104 | ESRRG | estrogen related receptor g... | XM_024453980.1 | 98.4% | 98.1% | 631_632ins21 |
| 42 | human | 2104 | ESRRG | estrogen related receptor g... | XM_017000628.1 | 95.8% | 95.8% | 1_57del |
| 43 | human | 2104 | ESRRG | estrogen related receptor g... | NM_001243518.2 | 94% | 94% | 1_84del |
| 44 | human | 2104 | ESRRG | estrogen related receptor g... | XM_011509267.1 | 94% | 94% | 1_84del |
| 45 | human | 2104 | ESRRG | estrogen related receptor g... | XM_011509268.2 | 94% | 94% | 1_84del |
| 46 | human | 2104 | ESRRG | estrogen related receptor g... | XM_011509269.2 | 94% | 94% | 1_84del |
| 47 | human | 2104 | ESRRG | estrogen related receptor g... | NM_001438.4 | 93.5% | 93.3% | 1_69del;700_701ins21 |
| 48 | human | 2104 | ESRRG | estrogen related receptor g... | XM_011509265.3 | 92.6% | 92.6% | 1_105del |
| 49 | human | 2104 | ESRRG | estrogen related receptor g... | XM_017000621.2 | 92.6% | 92.6% | 1_105del |
| 50 | human | 2104 | ESRRG | estrogen related receptor g... | XM_017000622.1 | 92.6% | 92.6% | 1_105del |
| 51 | human | 2104 | ESRRG | estrogen related receptor g... | XM_017000623.2 | 92.6% | 92.6% | 1_105del |
| 52 | human | 2104 | ESRRG | estrogen related receptor g... | XM_017000624.2 | 92.6% | 92.6% | 1_105del |
| 53 | human | 2104 | ESRRG | estrogen related receptor g... | XM_017000625.1 | 92.6% | 92.6% | 1_105del |
| 54 | human | 2104 | ESRRG | estrogen related receptor g... | XM_017000626.1 | 92.5% | 92.3% | 1_84del;715_716ins21 |
| 55 | human | 2104 | ESRRG | estrogen related receptor g... | XM_017000627.1 | 92.5% | 92.3% | 1_84del;715_716ins21 |
| 56 | human | 2104 | ESRRG | estrogen related receptor g... | XM_011509266.3 | 91.1% | 90.9% | 1_105del;736_737ins21 |
| 57 | human | 2104 | ESRRG | estrogen related receptor g... | NM_001243507.2 | 89.5% | 89.3% | 400_401ins117;514_515ins21 |
| 58 | human | 2104 | ESRRG | estrogen related receptor g... | NM_001243506.2 | 61.7% | 61.5% | 0_1ins486;145_146ins21 |
| 59 | human | 2104 | ESRRG | estrogen related receptor g... | NM_001243505.2 | 46.8% | 46.8% | 0_1ins705 |
| 60 | mouse | 26381 | Esrrg | estrogen-related receptor g... | NM_001243792.1 | 91.7% | 98.1% | (many diffs) |
| 61 | mouse | 26381 | Esrrg | estrogen-related receptor g... | XM_006497164.3 | 91.7% | 98.1% | (many diffs) |
| 62 | mouse | 26381 | Esrrg | estrogen-related receptor g... | XM_006497165.3 | 91.7% | 98.1% | (many diffs) |
| 63 | mouse | 26381 | Esrrg | estrogen-related receptor g... | XM_006497167.3 | 91.7% | 98.1% | (many diffs) |
| 64 | mouse | 26381 | Esrrg | estrogen-related receptor g... | XM_006497170.1 | 91.7% | 98.1% | (many diffs) |
| 65 | mouse | 26381 | Esrrg | estrogen-related receptor g... | XM_011238914.2 | 89.2% | 95.5% | (many diffs) |
| 66 | mouse | 26381 | Esrrg | estrogen-related receptor g... | XM_011238915.2 | 89.2% | 95.5% | (many diffs) |
| 67 | mouse | 26381 | Esrrg | estrogen-related receptor g... | XM_011238916.2 | 89.2% | 95.5% | (many diffs) |
| 68 | mouse | 26381 | Esrrg | estrogen-related receptor g... | XM_011238917.2 | 89.2% | 95.5% | (many diffs) |
| 69 | mouse | 26381 | Esrrg | estrogen-related receptor g... | XM_011238918.2 | 89.2% | 95.5% | (many diffs) |
| 70 | mouse | 26381 | Esrrg | estrogen-related receptor g... | XM_011238919.2 | 89.2% | 95.5% | (many diffs) |
| 71 | mouse | 26381 | Esrrg | estrogen-related receptor g... | XM_011238920.2 | 89.2% | 95.5% | (many diffs) |
| 72 | mouse | 26381 | Esrrg | estrogen-related receptor g... | NM_011935.3 | 87.1% | 93.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1392
- ORF length:
- 1326
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatgtc aaacaaagat cgacacattg attccagctg ttcgtccttc atcaagacgg 121 aaccttccag cccagcctcc ctgacggaca gcgtcaacca ccacagccct ggtggctctt 181 cagacgccag tgggagctac agttcaacca tgaatggcca tcagaacgga cttgactcgc 241 cacctctcta cccttctgct cctatcctgg gaggtagtgg gcctgtcagg aaactgtatg 301 atgactgctc cagcaccatt gttgaagatc cccagaccaa gtgtgaatac atgctcaact 361 cgatgcccaa gagactgtgt ttagtgtgtg gtgacatcgc ttctgggtac cactatgggg 421 tagcatcatg tgaagcctgc aaggcattct tcaagaggac aattcaaggc aatatagaat 481 acagctgccc tgccacgaat gaatgtgaaa tcacaaagcg cagacgtaaa tcctgccagg 541 cttgccgctt catgaagtgt ttaaaagtgg gcatgctgaa agaaggggtg cgtcttgaca 601 gagtacgtgg aggtcggcag aagtacaagc gcaggataga tgcggagaac agcccatacc 661 tgaaccctca gctggttcag ccagccaaaa agccattgct ctggtctgat cctgcagata 721 acaagattgt ctcacatttg ttggtggctg aaccggagaa gatctatgcc atgcctgacc 781 ctactgtccc cgacagtgac atcaaagccc tcactacact gtgtgacttg gccgaccgag 841 agttggtggt tatcattgga tgggcgaagc atattccagg cttctccacg ctgtccctgg 901 cggaccagat gagccttctg cagagtgctt ggatggaaat tttgatcctt ggtgtcgtat 961 accggtctct ttcgtttgag gatgaacttg tctatgcaga cgattatata atggacgaag 1021 accagtccaa attagcaggc cttcttgatc taaataatgc tatcctgcag ctggtaaaga 1081 aatacaagag catgaagctg gaaaaagaag aatttgtcac cctcaaagct atagctcttg 1141 ctaattcaga ctccatgcac atagaagatg ttgaagccgt tcagaagctt caggatgtct 1201 tacatgaagc gctgcaggat tatgaagctg gccagcacat ggaagaccct cgtcgagctg 1261 gcaagatgct gatgacactg ccactcctga ggcagacctc taccaaggcc gtgcagcatt 1321 tctacaacat caaactagaa ggcaaagtcc caatgcacaa actttttttg gaaatgttgg 1381 aggccaaggt ctgcccaact ttcttgtaca aagtggttgg taagcctatc cctaaccctc 1441 tcctcggtct cgattctacg tagtaatgag ctagcgctaa ccggtggcgc gttaagtcga 1501 caatcaacct ctggatta