Construct: ORF ccsbBroad304_11252

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF015886.1_s304c1, BRDN0000409486
Derived from:
ccsbBroadEn_11252
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
STAM (8027)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_11252
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 8027 STAM signal transducing adaptor ... XM_011519695.3 80.8% 79.3% 799G>T;1167_1312del;1356_1494del
2 human 8027 STAM signal transducing adaptor ... NM_003473.4 74.5% 73.1% 799G>T;1167_1312del;1356_1620del
3 human 8027 STAM signal transducing adaptor ... NM_001324282.2 68.6% 67.2% (many diffs)
4 human 8027 STAM signal transducing adaptor ... NM_001324283.2 65.3% 63.8% (many diffs)
5 human 8027 STAM signal transducing adaptor ... NM_001324284.2 65.3% 63.8% (many diffs)
6 human 8027 STAM signal transducing adaptor ... NM_001324285.2 65.3% 63.8% (many diffs)
7 human 8027 STAM signal transducing adaptor ... NM_001324286.2 56.6% 54.8% (many diffs)
8 human 8027 STAM signal transducing adaptor ... NM_001324287.2 54% 52.5% (many diffs)
9 human 8027 STAM signal transducing adaptor ... NM_001324288.2 48.9% 46.2% (many diffs)
10 human 8027 STAM signal transducing adaptor ... NM_001324289.2 48.9% 46.2% (many diffs)
11 human 8027 STAM signal transducing adaptor ... XM_017016685.2 48.9% 46.2% (many diffs)
12 mouse 20844 Stam signal transducing adaptor ... NM_011484.2 66.2% 69.3% (many diffs)
13 mouse 20844 Stam signal transducing adaptor ... XM_017316829.1 58% 60.4% (many diffs)
14 mouse 20844 Stam signal transducing adaptor ... XR_373935.3 50% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1275
ORF length:
1209
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgcc tctttttgcc accaatccct tcgatcagga tgttgagaaa gcaaccagcg
121agatgaatac tgctgaggac tggggcctca ttttggatat ctgtgataaa gttggtcagt
181ctcgcactgg acctaaggat tgtcttcggt ctattatgag aagagtgaac cacaaagatc
241ctcacgttgc tatgcaggct ttgactcttc taggagcatg tgtatcaaac tgtggcaaaa
301tttttcattt agaagtatgt tcaagagatt ttgctagtga agtaagcaac gtattaaata
361agggtcatcc taaagtatgt gaaaaattaa aggctcttat ggttgaatgg acagatgaat
421ttaagaatga tccacagctt agtctaatat cagcaatgat taagaacctt aaggaacaag
481gagttacgtt cccagctatt ggctctcagg ctgcagaaca agcaaaagca agcccagctc
541ttgtagccaa ggatcctggt actgtggcta acaaaaaaga agaagaagat ttagcaaaag
601ccattgagtt gtctctcaag gaacaaaggc agcagtcaac caccctttcc actttgtatc
661caagcacatc cagtctctta actaaccacc aacatgaagg ccgaaaagtt cgtgctatat
721atgactttga agctgctgaa gacaatgaac ttacttttaa agctggagaa attattacag
781ttcttgatga cagtgatcct aactggtgga aaggtgaaac ccatcaaggc atagggttat
841ttccttctaa ttttgtgact gcatatctca ctgctgaacc agaaatgatt aaaacagaga
901agaagacggt acaatttagt gatgatgttc aggtagagac aatagaacca gagccggaac
961cagcctttat tgatgaagat aaaatggacc agttgctaca gatgctgcaa agtacagacc
1021ccagtgatga tcagccagac ctaccagagc tgcttcatct tgaagcaatg tgtcaccaga
1081tgggacctct cattgatgaa aagctggaag atattgatag aaaacattca gaactctcag
1141aacttaatgt gaaagtgatg gaggcccttt ccttatatac caagttaatg aacgaagatc
1201cgatgtattc catgtatgca aagttacaga atcagccagg cagtggtccc accatccgca
1261aacccagccc ttcctaccca actttcttgt acaaagtggt tggtaagcct atccctaacc
1321ctctcctcgg tctcgattct acgtagtaat gagctagcgc taaccggtgg cgcgttaagt
1381cgacaatcaa cctctggatt a

Download FASTA (ORF) (Full)