Construct: ORF ccsbBroad304_11389

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF017355.1_s304c1, BRDN0000461675
Derived from:
ccsbBroadEn_11389
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CHD1L (9557)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_11389
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 9557 CHD1L chromodomain helicase DNA b... NM_001256338.3 99.9% 100% 657A>G
2 human 9557 CHD1L chromodomain helicase DNA b... NM_001348454.2 92.9% 93% 125_280del;813A>G
3 human 9557 CHD1L chromodomain helicase DNA b... NM_001348455.2 92% 86.9% (many diffs)
4 human 9557 CHD1L chromodomain helicase DNA b... NM_001256337.3 88.8% 88.8% 0_1ins231;426A>G
5 human 9557 CHD1L chromodomain helicase DNA b... NM_001348456.2 88.8% 88.8% 0_1ins231;426A>G
6 human 9557 CHD1L chromodomain helicase DNA b... NM_001348457.2 88.8% 88.8% 0_1ins231;426A>G
7 human 9557 CHD1L chromodomain helicase DNA b... NM_001348458.2 88.8% 88.8% 0_1ins231;426A>G
8 human 9557 CHD1L chromodomain helicase DNA b... NM_001348459.2 88.8% 88.8% 0_1ins231;426A>G
9 human 9557 CHD1L chromodomain helicase DNA b... NM_001348460.2 88.8% 88.8% 0_1ins231;426A>G
10 human 9557 CHD1L chromodomain helicase DNA b... NM_001348461.2 88.8% 88.8% 0_1ins231;426A>G
11 human 9557 CHD1L chromodomain helicase DNA b... NM_001348462.2 88.8% 88.8% 0_1ins231;426A>G
12 human 9557 CHD1L chromodomain helicase DNA b... NM_001348463.2 88.8% 88.8% 0_1ins231;426A>G
13 human 9557 CHD1L chromodomain helicase DNA b... NM_001348464.2 88.8% 88.8% 0_1ins231;426A>G
14 human 9557 CHD1L chromodomain helicase DNA b... NM_001348465.2 88.8% 88.8% 0_1ins231;426A>G
15 human 9557 CHD1L chromodomain helicase DNA b... NM_001348466.2 88.8% 88.8% 0_1ins231;426A>G
16 human 9557 CHD1L chromodomain helicase DNA b... NM_001348453.2 86.2% 81.5% (many diffs)
17 human 9557 CHD1L chromodomain helicase DNA b... NM_024568.4 86.2% 81.5% (many diffs)
18 human 9557 CHD1L chromodomain helicase DNA b... NM_001256336.3 84.8% 80.2% (many diffs)
19 human 9557 CHD1L chromodomain helicase DNA b... NM_001348451.2 81.9% 77.5% (many diffs)
20 human 9557 CHD1L chromodomain helicase DNA b... NM_001348452.1 81.9% 77.5% (many diffs)
21 human 9557 CHD1L chromodomain helicase DNA b... NR_145693.2 81.1% (many diffs)
22 human 9557 CHD1L chromodomain helicase DNA b... NR_145690.2 79.5% (many diffs)
23 human 9557 CHD1L chromodomain helicase DNA b... NM_004284.6 77.2% 77.2% 125_736del;1269A>G
24 human 9557 CHD1L chromodomain helicase DNA b... NR_145687.2 73.8% (many diffs)
25 human 9557 CHD1L chromodomain helicase DNA b... NR_145695.2 72.2% (many diffs)
26 human 9557 CHD1L chromodomain helicase DNA b... NR_145681.2 72.1% (many diffs)
27 human 9557 CHD1L chromodomain helicase DNA b... NR_145688.2 71% (many diffs)
28 human 9557 CHD1L chromodomain helicase DNA b... NR_145684.2 70.3% (many diffs)
29 human 9557 CHD1L chromodomain helicase DNA b... NR_145689.2 70.2% (many diffs)
30 human 9557 CHD1L chromodomain helicase DNA b... NR_145685.2 69.6% (many diffs)
31 human 9557 CHD1L chromodomain helicase DNA b... NR_145692.2 69.4% (many diffs)
32 human 9557 CHD1L chromodomain helicase DNA b... NR_145691.2 68.8% (many diffs)
33 human 9557 CHD1L chromodomain helicase DNA b... XM_024451049.1 67.8% 67.8% 0_1ins669
34 human 9557 CHD1L chromodomain helicase DNA b... XM_024451050.1 67.8% 67.8% 0_1ins669
35 human 9557 CHD1L chromodomain helicase DNA b... XM_024451051.1 67.8% 67.8% 0_1ins669
36 human 9557 CHD1L chromodomain helicase DNA b... NR_145683.2 67.7% (many diffs)
37 human 9557 CHD1L chromodomain helicase DNA b... NR_145682.2 67.5% (many diffs)
38 human 9557 CHD1L chromodomain helicase DNA b... NR_046070.3 63.8% (many diffs)
39 human 9557 CHD1L chromodomain helicase DNA b... NR_145694.2 63.7% (many diffs)
40 human 9557 CHD1L chromodomain helicase DNA b... XR_001737550.2 63.6% (many diffs)
41 human 9557 CHD1L chromodomain helicase DNA b... NR_145686.2 63.5% (many diffs)
42 mouse 68058 Chd1l chromodomain helicase DNA b... XM_017319700.1 73.1% 71.9% (many diffs)
43 mouse 68058 Chd1l chromodomain helicase DNA b... NM_026539.2 64.5% 63.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2145
ORF length:
2079
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgga gcgcgcgggc gctactagcc gcgggggcca agcccctggc ttcttactgc
121ggcttcatac tgagggccga gccgaggcgg cgcgggtgca ggagcaggac ttacggcagt
181gggggctgac agcaagtgaa ctgcacaaac tcttgcagcc atttctgctg aggcgagtga
241aagctgaggt agctacagag cttcccaaga agacagaagt agtgatatac catggcatgt
301cagcattgca gaagaaatac tacaaggcca ttttgatgaa agacctagat gcatttgaaa
361atgagacggc aaagaaagtt aaactacaga acattttgtc ccagcttcga aagtgtgtgg
421atcacccata tttgtttgat ggtgtggagc cggagccttt tgaagttgga gaccacctga
481ctgaggctag tgggaagctt cacctgctgg ataagctact agcattcctg tattctgggg
541gccatcgggt tttacttttc tcccaaatga cccagatgtt ggatattctc caagactata
601tggattacag aggctacagc tatgagcgtg tggatggttc tgtgagagga gaagagagac
661acttggccat taagaacttt ggacagcagc ccattttcgt ttttctcctg agtactaggg
721cgggtggagt tggcatgaac ttaacagcag cagatactgt gatttttgtt gacagtgact
781ttaatcctca gaatgacttg caagcagctg ccagggctca tcgcattggc caaaacaagt
841ctgttaaagt tattcggctg attggtcgag acactgtgga agaaatagtc tataggaaag
901cagcctccaa actgcagctc accaacatga tcatagaagg aggccatttt actctgggag
961cccagaaacc cgctgccgat gctgacctcc agttgagtga gatactcaaa tttggtttgg
1021ataaactgct ggcctctgag gggagcacca tggatgaaat agacctggag tccatcctgg
1081gagaaacaaa agatggccag tgggtctctg atgccttgcc tgcagcagaa ggagggagca
1141gagatcaaga ggaaggaaaa aatcatatgt acttatttga aggtaaagat tattctaaag
1201agcccagtaa ggaagacaga aaatcatttg aacaactggt aaaccttcag aaaacccttt
1261tggagaaagc tagtcaagag ggccgatcac tccgaaataa aggcagtgtt ctcatcccag
1321gccttgtgga gggatctacc aaaaggaagc gggttctgag tccagaagag ctggaggaca
1381gacagaagaa aagacaagaa gcagctgcca agagaaggag actcatagag gagaagaaga
1441ggcaaaagga agaggctgaa cataagaaaa agatggcctg gtgggaatcc aacaattacc
1501agtccttctg cctgccctct gaggagagcg agccagagga ccttgagaat ggggaagaga
1561gctctgctga gctggattac caagacccag atgctacttc cctcaagtac gttagtggtg
1621atgtcaccca ccctcaggct ggggccgagg atgctctcat tgtgcactgc gtagatgact
1681ctggccactg gggcagaggt ggtttattta cagctctgga aaagcgatcc gctgagccaa
1741gaaaaatata tgagctggct gggaaaatga aagacctgag tttgggaggt gtccttttat
1801ttcctgttga tgataaagaa tcaagaaaca aagggcaaga tttgttggcc ttgattgtgg
1861ctcagcatcg tgatcgttcc aatgtcctgt ctggcattaa gatggcagcc ctagaagagg
1921gcctgaagaa gatattttta gcagcaaaaa agaagaaagc aagtgttcat cttccacgta
1981ttggacatgc cacgaaaggt tttaactggt atggtactga gcgacttatt cggaaacatc
2041tggctgcaag aggcatccca acttacatat attattttcc tagaagcaag tctgctgtcc
2101ttcattcaca gtcttcatct tcctcctcaa gacagctggt gccttaccca actttcttgt
2161acaaagtggt tggtaagcct atccctaacc ctctcctcgg tctcgattct acgtagtaat
2221gagctagcgc taaccggtgg cgcgttaagt cgacaatcaa cctctggatt a

Download FASTA (ORF) (Full)