Construct: ORF ccsbBroad304_11429

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF017777.1_s304c1, BRDN0000406512
Derived from:
ccsbBroadEn_11429
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SRGAP3 (9901)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_11429
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 9901 SRGAP3 SLIT-ROBO Rho GTPase activa... XM_017007580.2 46.3% 45.6% (many diffs)
2 human 9901 SRGAP3 SLIT-ROBO Rho GTPase activa... XM_017007579.1 37.5% 36.9% (many diffs)
3 human 9901 SRGAP3 SLIT-ROBO Rho GTPase activa... XM_017007576.2 33.6% 33% (many diffs)
4 human 9901 SRGAP3 SLIT-ROBO Rho GTPase activa... XM_024453843.1 33.4% 32.9% (many diffs)
5 human 9901 SRGAP3 SLIT-ROBO Rho GTPase activa... XM_024453844.1 33.4% 32.9% (many diffs)
6 human 9901 SRGAP3 SLIT-ROBO Rho GTPase activa... NM_001033117.3 30.6% 30.1% (many diffs)
7 human 9901 SRGAP3 SLIT-ROBO Rho GTPase activa... XM_011534296.2 30.3% 29.8% (many diffs)
8 human 9901 SRGAP3 SLIT-ROBO Rho GTPase activa... XM_017007575.1 30.1% 29.6% (many diffs)
9 human 9901 SRGAP3 SLIT-ROBO Rho GTPase activa... NM_014850.4 29.9% 29.4% (many diffs)
10 human 9901 SRGAP3 SLIT-ROBO Rho GTPase activa... XM_011534295.2 29.8% 29.3% (many diffs)
11 human 9901 SRGAP3 SLIT-ROBO Rho GTPase activa... XM_017007574.1 29.4% 29% (many diffs)
12 human 9901 SRGAP3 SLIT-ROBO Rho GTPase activa... XR_001740391.1 29.3% (many diffs)
13 human 9901 SRGAP3 SLIT-ROBO Rho GTPase activa... XM_011534301.3 29% 28.5% (many diffs)
14 human 9901 SRGAP3 SLIT-ROBO Rho GTPase activa... XM_024453842.1 27.9% 27.4% (many diffs)
15 mouse 259302 Srgap3 SLIT-ROBO Rho GTPase activa... XM_006506147.2 63.7% 67% (many diffs)
16 mouse 259302 Srgap3 SLIT-ROBO Rho GTPase activa... XM_006506146.1 35.4% 37.1% (many diffs)
17 mouse 259302 Srgap3 SLIT-ROBO Rho GTPase activa... XM_006506145.1 28.4% 29.8% (many diffs)
18 mouse 259302 Srgap3 SLIT-ROBO Rho GTPase activa... NM_080448.4 27.8% 29.2% (many diffs)
19 mouse 259302 Srgap3 SLIT-ROBO Rho GTPase activa... XM_006506144.1 27.7% 29% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1071
ORF length:
1005
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgaa caatgtcatc gtccgcctct cccagatcag tgaggatgtc atcagactct
121tcaaaaagag caaggagatt ggcctgcaga tgcacgagga gctcctgaag gtgaccaatg
181agctctacac agtcatgaaa acctaccaca tgtaccatgc agagagcatc agtgcggaaa
241gcaagctgaa ggaggctgag aagcaggagg agaagcagtt caataagtca ggagacctca
301gcatgaacct gctccggcac gaggaccggc cccagcgccg cagctctgtg aagaagattg
361agaagatgaa ggagaagagg caggccaagt actctgagaa caagctgaaa tgcacaaagg
421cccggaatga ctacttgctc aatctggcag ccaccaacgc agctataagc aaatactaca
481tccatgatgt ctctgatctg atcgattgct gtgatttggg cttccatgcc agcctggccc
541gcaccttccg gacctatctc tcagctgaat acaacctgga gacctctcgc cacgaagggc
601tggatgtcat tgagaatgca gtggacaacc tggattcccg aagtgacaag cacacagtca
661tggacatgtg caatcaagtc ttctgccctc cactcaagtt cgagttccag ccccacatgg
721gggatgaggt ctgccaggtc agcgctcagc agcccgtcca gacagaactg ctcatgcgtt
781atcaccagct gcagtccaga ctggccaccc tcaagataga gaatgaggag gttaggaaaa
841ccctggatgc caccatgcag acattacagg acatgctgac tgtggaggac tttgatgtct
901ccgatgcctt ccaacacagt cgatcgacag agtccgtcaa gtcggctgcc tctgaggcct
961acatgagcaa gatcaacatt gccaagagga gagccaacca gcaggaaaca gaaatgtttt
1021attttacaaa cgggcctgat gatgttttcc ccatttgcca tccaagactc tgcccaactt
1081tcttgtacaa agtggttggt aagcctatcc ctaaccctct cctcggtctc gattctacgt
1141agtaatgagc tagcgctaac cggtggcgcg ttaagtcgac aatcaacctc tggatta

Download FASTA (ORF) (Full)