Construct: ORF ccsbBroad304_12190

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF005395.1_s304c1, BRDN0000402103
Derived from:
ccsbBroadEn_12190
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
UQCC1 (55245)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_12190
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 55245 UQCC1 ubiquinol-cytochrome c redu... XM_011528882.2 87.5% 87.7% 0_1ins68;2_3delTG
2 human 55245 UQCC1 ubiquinol-cytochrome c redu... XM_011528883.2 87.5% 87.7% 0_1ins68;2_3delTG
3 human 55245 UQCC1 ubiquinol-cytochrome c redu... XM_011528884.2 87.5% 87.7% 0_1ins68;2_3delTG
4 human 55245 UQCC1 ubiquinol-cytochrome c redu... XM_011528881.3 84.7% 81.4% (many diffs)
5 human 55245 UQCC1 ubiquinol-cytochrome c redu... NM_001184977.1 80.9% 70.7% 1_59del;130_202del
6 human 55245 UQCC1 ubiquinol-cytochrome c redu... XM_011528878.2 70% 61.3% 1_59del;130_310del
7 human 55245 UQCC1 ubiquinol-cytochrome c redu... XM_011528879.1 69.2% 64.7% (many diffs)
8 human 55245 UQCC1 ubiquinol-cytochrome c redu... XM_011528880.2 69.2% 64.7% (many diffs)
9 human 55245 UQCC1 ubiquinol-cytochrome c redu... NM_018244.5 62.5% 54.9% 1_59del;130_406del
10 human 55245 UQCC1 ubiquinol-cytochrome c redu... XM_011528877.1 59.7% 52.5% 1_59del;130_448del
11 human 55245 UQCC1 ubiquinol-cytochrome c redu... NM_199487.2 53.8% 46.3% 1_59del;130_406del;572_573ins78
12 mouse 56046 Uqcc1 ubiquinol-cytochrome c redu... NM_018888.4 56.4% 52.3% (many diffs)
13 mouse 56046 Uqcc1 ubiquinol-cytochrome c redu... XM_011239704.2 52.9% 49% (many diffs)
14 mouse 56046 Uqcc1 ubiquinol-cytochrome c redu... NR_024487.2 18.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
627
ORF length:
561
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgca gccgattgat acctgtgtct cctacccaag gacaggggga cagggctctg
121tctcgcactt cccagggtgt cagatgcctg atacattcaa ttcatggttt cttataaccc
181tactccacgt ctggatgtgt ctagtccgaa tgaagcagga aggccggagt gggaagtaca
241tgtgtcgtat catagttcat tttatgtggg aggatgttca gcagcgcggc agagtcatgg
301gggttaatcc ctatatcctg aagaagaaca tgatcctcat gacaaatcat ttctatgcag
361cgatcttggg atatgatgag gggatccttt cagatgatca tgggctggcc gctgccctct
421ggagaacctt cttcaaccgg aaatgtgaag accctcgaca tcttgaattg ctggtagagt
481atgtgaggaa acagatacag tacctggact ccatgaacgg ggaggatctg cttctgacag
541gggaggtgag ctggcgccct ctagtggaga agaatcctca gagcatcctg aagccccatt
601ctccgactta caacgacgag ggactttgcc caactttctt gtacaaagtg gttggtaagc
661ctatccctaa ccctctcctc ggtctcgatt ctacgtagta atgagctagc gctaaccggt
721ggcgcgttaa gtcgacaatc aacctctgga tta

Download FASTA (ORF) (Full)