Construct: ORF ccsbBroad304_12247

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014245.1_s304c1, BRDN0000410227
Derived from:
ccsbBroadEn_12247
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
NBPF1 (55672)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_12247
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 284565 NBPF15 NBPF member 15 NM_001170755.2 87.5% 85.1% (many diffs)
2 human 284565 NBPF15 NBPF member 15 NM_173638.4 87.5% 85.1% (many diffs)
3 human 84224 NBPF3 NBPF member 3 NM_001256417.3 69.9% 62.1% (many diffs)
4 human 84224 NBPF3 NBPF member 3 NM_001330381.2 68.5% 60.8% (many diffs)
5 human 84224 NBPF3 NBPF member 3 XM_006710958.1 68.5% 60.8% (many diffs)
6 human 84224 NBPF3 NBPF member 3 XM_006710959.2 68.5% 60.8% (many diffs)
7 human 84224 NBPF3 NBPF member 3 XM_011542276.1 68.5% 60.8% (many diffs)
8 human 84224 NBPF3 NBPF member 3 XM_011542277.1 68.5% 60.8% (many diffs)
9 human 84224 NBPF3 NBPF member 3 XM_011542278.1 68.5% 60.8% (many diffs)
10 human 84224 NBPF3 NBPF member 3 XM_011542281.1 68.5% 60.8% (many diffs)
11 human 84224 NBPF3 NBPF member 3 XM_017002499.2 68.5% 60.8% (many diffs)
12 human 84224 NBPF3 NBPF member 3 XM_024450188.1 68.5% 60.8% (many diffs)
13 human 84224 NBPF3 NBPF member 3 XM_024450190.1 68.5% 60.8% (many diffs)
14 human 84224 NBPF3 NBPF member 3 XM_017002500.1 63.8% 57.2% (many diffs)
15 human 84224 NBPF3 NBPF member 3 XM_017002501.1 63.8% 57.2% (many diffs)
16 human 84224 NBPF3 NBPF member 3 XM_017002502.1 63.8% 57.2% (many diffs)
17 human 102724250 LOC102724250 neuroblastoma breakpoint fa... XM_024452498.1 63.3% 62.8% (many diffs)
18 human 84224 NBPF3 NBPF member 3 NM_032264.5 63.2% 56.1% (many diffs)
19 human 728841 NBPF8 NBPF member 8 NM_001037501.3 62.3% 60.9% (many diffs)
20 human 400818 NBPF9 NBPF member 9 NM_001037675.3 62.3% 60.6% (many diffs)
21 human 84224 NBPF3 NBPF member 3 XM_006710957.1 58.9% 52.8% (many diffs)
22 human 84224 NBPF3 NBPF member 3 NM_001256416.3 56.9% 51.1% (many diffs)
23 human 200030 NBPF11 NBPF member 11 NM_001101663.4 54.6% 46.5% (many diffs)
24 human 400818 NBPF9 NBPF member 9 NM_001277444.1 53% 51.7% (many diffs)
25 human 200030 NBPF11 NBPF member 11 NM_183372.6 51.7% 44% (many diffs)
26 human 149013 NBPF12 NBPF member 12 XM_024453443.1 49.6% 48.2% (many diffs)
27 human 55672 NBPF1 NBPF member 1 NM_017940.6 49.5% 49.4% (many diffs)
28 human 102724250 LOC102724250 neuroblastoma breakpoint fa... XM_017030107.2 47.5% 21.2% (many diffs)
29 human 101929780 NBPF25P NBPF member 25, pseudogene NR_104217.1 46.3% (many diffs)
30 human 101060684 NBPF26 NBPF member 26 NM_001351372.1 44.1% 43% (many diffs)
31 human 200030 NBPF11 NBPF member 11 XM_024453858.1 43% 40% (many diffs)
32 human 149013 NBPF12 NBPF member 12 NM_001278141.1 40.3% 39.2% (many diffs)
33 human 200030 NBPF11 NBPF member 11 NR_110864.2 31.7% (many diffs)
34 human 200030 NBPF11 NBPF member 11 XR_002959662.1 31.6% (many diffs)
35 human 200030 NBPF11 NBPF member 11 XR_002959669.1 31.4% (many diffs)
36 human 200030 NBPF11 NBPF member 11 XR_002959670.1 29.9% (many diffs)
37 human 200030 NBPF11 NBPF member 11 NR_046188.4 29.5% (many diffs)
38 human 84224 NBPF3 NBPF member 3 NR_046176.3 29.4% (many diffs)
39 human 343505 NBPF7 NBPF member 7 XM_017001186.1 28.1% 22% (many diffs)
40 human 200030 NBPF11 NBPF member 11 XM_024453859.1 25.5% 23.6% (many diffs)
41 human 728841 NBPF8 NBPF member 8 NR_102405.2 22% (many diffs)
42 human 728841 NBPF8 NBPF member 8 NR_102404.2 21.3% (many diffs)
43 human 25832 NBPF14 NBPF member 14 NM_015383.2 20.3% 19% (many diffs)
44 human 100132406 NBPF10 NBPF member 10 NM_001039703.6 15.8% 14.8% (many diffs)
45 human 100132406 NBPF10 NBPF member 10 NM_001302371.3 15.1% 14.1% (many diffs)
46 human 101060226 NBPF19 NBPF member 19 NM_001351365.1 14.9% 13.9% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1875
ORF length:
1809
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgct gaggaatgag cgacagttca aggaggagaa gcttgcagag cagctcaagc
121aagctgagga gctcaggcaa tataaagtcc tggttcactc tcaggaacga gagctgaccc
181agttaaggga gaagttacgg gaagggagag atgcctcctg ctcattgaat cagcatctcc
241aggccctcct cactccggat gagccagaca agtcccaggg gcaggacctc caagaacagc
301tggctgaggg gtgtagactg gcacagcacc ttgtccaaaa gctcagccca gaaaatgaca
361acgatgacga tgaagatgtt caagttgagg tggctgagaa agtgcagaaa tcgtctgccc
421ccagggagat gccgaaggct gaagaaaagg aagtccctga ggactcactg gaggaatgtg
481ccatcacttg ttcaaatagc catggccctt atgactccaa ccagccacat aggaaaacca
541aaatcacatt tgaggaagac aaagtcgact caactctcat tggctcatcc tctcatgttg
601aatgggagga tgctgtacac attatcccag aaaatgaaag tgatgatgag gaagaggaag
661aaaaagggcc agtgtctccc aggaatctgc aggagtctga agaggaggaa gtcccccagg
721agtcctggga tgaaggttat tcgactctct caattcctcc tgaaatgttg gcctcgtaca
781agtcttacag cggcacattt cactcattag aggaacagca agtctgcatg gctgttgaca
841taggcggaca tcggtgggat caagtgaaaa aggaggacca agaggcaaca ggtcccaggc
901tcagcaggga gctgctggat gagaaagggc ctgaagtctt gcaggactca ctggatagat
961gttattcaac tccttcaggt tatcttgaac tgactgactc atgccagccc tacagaagtg
1021ccttttacat attggagcaa cagcgtgttg gctgggctct tgacatggat gaaattgaaa
1081agtaccaaga agtggaagaa gaccaagacc catcatgccc caggctcagc agggagctgc
1141tggatgagaa agagcctgaa gtcttgcagg actcactgga tagatgttat tcgactcctt
1201caggttatct tgaactgcct gacttaggcc agccctacag aagtgctgtt tactcattgg
1261aggaacagta ccttggcttg gctcttgacg tggacagaat taaaaaggac caagaagagg
1321aagaagacca aggcccacca tgccccaggc tcagcaggga gctgctggag gcagtagagc
1381ctgaagtctt gcaggactca ctggatagat gttattcaac tccttccagt tgtcttgaac
1441agcctgactc ctgcctgccc tatggaagtt ccttttatgc attggaggaa aaacatgttg
1501gcttttctct tgacgtggga gaaattgaaa agaaggggaa ggggaagaaa agaaggggaa
1561gaagatcaac gaagaaaaga aggagaaggg gaagaaaaga aggggaagaa gatcaaaacc
1621caccatgccc caggctcagc ggtgtgctga tggaagtgga agagcctgaa gtcttacagg
1681actcactgga tagatgttat tcgactccgt caatgttctt tgaactacct gactcattcc
1741agcactacag aagtgtgttt tactcatttg aggaacagca catcagcttc gcccttgacg
1801tggacaatag gtttcttact ttgatgggaa gaagtctcca cctggtcttc cagatgggag
1861tcatattccc acaataccca actttcttgt acaaagtggt tggtaagcct atccctaacc
1921ctctcctcgg tctcgattct acgtagtaat gagctagcgc taaccggtgg cgcgttaagt
1981cgacaatcaa cctctggatt a

Download FASTA (ORF) (Full)

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