Transcript: Human NR_046188.4

Homo sapiens NBPF member 11 (NBPF11), transcript variant 2, non-coding RNA.

Source:
NCBI, updated 2019-07-31
Taxon:
Homo sapiens (human)
Gene:
NBPF11 (200030)
Length:
5626
CDS:
(non-coding)

Additional Resources:

NCBI RefSeq record:
NR_046188.4
NBCI Gene record:
NBPF11 (200030)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the exonic sequence of this non-coding transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human NR_046188.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000282776 TGGATGTCAGGATGCTCTAAA pLKO_005 2005 3UTR 100% 13.200 7.920 N NBPF11 n/a
2 TRCN0000352961 CTGAGGAGCTCAGGCAATATA pLKO_005 1524 3UTR 100% 15.000 7.500 Y NBPF11 n/a
3 TRCN0000244546 CTTGACGTGGACAGAATTAAA pLKO_005 3417 3UTR 100% 15.000 7.500 Y NBPF11 n/a
4 TRCN0000255811 GAGGAGCTCAGGCAATATAAA pLKO_005 1526 3UTR 100% 15.000 7.500 Y NBPF15 n/a
5 TRCN0000369471 TCTTGACGTGGACAGAATTAA pLKO_005 3416 3UTR 100% 15.000 7.500 Y NBPF14 n/a
6 TRCN0000242329 TGAGGAGCTCAGGCAATATAA pLKO_005 1525 3UTR 100% 15.000 7.500 Y NBPF9 n/a
7 TRCN0000244558 AGAGTGCAAAGACCTCATAAA pLKO_005 2254 3UTR 100% 13.200 6.600 Y NBPF10 n/a
8 TRCN0000242430 AGTCCTGGGATGAAGGTTATT pLKO_005 2934 3UTR 100% 13.200 6.600 Y NBPF11 n/a
9 TRCN0000369532 CACCAACTGCTCTTGACAATT pLKO_005 4494 3UTR 100% 13.200 6.600 Y NBPF14 n/a
10 TRCN0000161314 GACTCACTGGATAGATGTTAT pLKO.1 3078 3UTR 100% 13.200 6.600 Y NBPF1 n/a
11 TRCN0000167775 GCAGCAGAACAAATACAAATA pLKO.1 2230 3UTR 100% 13.200 6.600 Y NBPF11 n/a
12 TRCN0000344135 GCATGTCTCTGAGCTTCTATA pLKO_005 4311 3UTR 100% 13.200 6.600 Y NBPF15 n/a
13 TRCN0000161173 GCTGTTGACATGGATGAAATT pLKO.1 3189 3UTR 100% 13.200 6.600 Y NBPF14 n/a
14 TRCN0000352962 GGAGTGATCAGTCGGACATTT pLKO_005 4231 3UTR 100% 13.200 6.600 Y NBPF11 n/a
15 TRCN0000282774 GTCCTGGGATGAAGGTTATTC pLKO_005 2935 3UTR 100% 13.200 6.600 Y NBPF11 n/a
16 TRCN0000161288 GTGCCATCACTTGTTCAAATA pLKO.1 1878 3UTR 100% 13.200 6.600 Y NBPF1 n/a
17 TRCN0000242432 TGTGCCATCACTTGTTCAAAT pLKO_005 1877 3UTR 100% 13.200 6.600 Y NBPF11 n/a
18 TRCN0000244547 TTCCAGATGGGAGTCATATTC pLKO_005 3974 3UTR 100% 13.200 6.600 Y NBPF11 n/a
19 TRCN0000242328 TTCTAGAAATCAACGAGAAAT pLKO_005 1308 3UTR 100% 13.200 6.600 Y NBPF9 n/a
20 TRCN0000242325 ACGAGAGCTGACCCAGTTAAG pLKO_005 1567 3UTR 100% 10.800 5.400 Y NBPF9 n/a
21 TRCN0000242327 ATTCGACTCCTTCAGGTTATC pLKO_005 3322 3UTR 100% 10.800 5.400 Y NBPF9 n/a
22 TRCN0000364788 CAATAAGCAGCCCTTACTAAG pLKO_005 3998 3UTR 100% 10.800 5.400 Y NBPF14 n/a
23 TRCN0000242431 GTATTGGAGCAACAGCGTATT pLKO_005 3162 3UTR 100% 10.800 5.400 Y NBPF11 n/a
24 TRCN0000263707 TATTGGAGCAACAGCGTATTG pLKO_005 3163 3UTR 100% 10.800 5.400 Y NBPF11 n/a
25 TRCN0000146474 CCTGAGTTTCATAGGAGGTAA pLKO.1 4756 3UTR 100% 4.950 2.475 Y NBPF15 n/a
26 TRCN0000163889 CCTGAGTTTCATAGGAGGTAA pLKO.1 4756 3UTR 100% 4.950 2.475 Y NBPF14 n/a
27 TRCN0000161501 GACGATGAAGATGTTCAAGTT pLKO.1 2579 3UTR 100% 4.950 2.475 Y NBPF14 n/a
28 TRCN0000128566 GATGACGATGAAGATGTTCAA pLKO.1 2576 3UTR 100% 4.950 2.475 Y NBPF15 n/a
29 TRCN0000127801 GCAGAGACAATGCTGTGAGTT pLKO.1 5102 3UTR 100% 4.950 2.475 Y NBPF15 n/a
30 TRCN0000165321 GTCTTCCAGATGGGAGTCATA pLKO.1 3971 3UTR 100% 4.950 2.475 Y NBPF1 n/a
31 TRCN0000181020 CTGGATGAGAAAGAGCCTGAA pLKO.1 3048 3UTR 100% 4.050 2.025 Y NBPF8 n/a
32 TRCN0000163782 GCTGTTTACTCATTGGAGGAA pLKO.1 3378 3UTR 100% 2.640 1.320 Y NBPF1 n/a
33 TRCN0000244560 GAGGATGCTGTACACATTATT pLKO_005 2819 3UTR 100% 15.000 7.500 Y NBPF10 n/a
34 TRCN0000364789 AGGATGCTGTACACATTATTC pLKO_005 2820 3UTR 100% 13.200 6.600 Y NBPF14 n/a
35 TRCN0000172811 GCAGGACTCACTGGATAGATT pLKO.1 3074 3UTR 100% 5.625 2.813 Y NBPF3 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript NR_046188.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_15343 pDONR223 79.7% 41.4% None (many diffs) n/a
2 ccsbBroad304_15343 pLX_304 0% 41.4% V5 (many diffs) n/a
3 TRCN0000476676 CTCGGTCCAAATACGACCGTGACC pLX_317 14.4% 41.4% V5 (many diffs) n/a
4 ccsbBroadEn_09966 pDONR223 100% 32.8% None (many diffs) n/a
5 ccsbBroad304_09966 pLX_304 0% 32.8% V5 (many diffs) n/a
6 TRCN0000476622 TTTTACCGTGCTGGCCAAGGACTT pLX_317 19.5% 32.8% V5 (many diffs) n/a
7 ccsbBroadEn_15282 pDONR223 73.8% 31.7% None (many diffs) n/a
8 ccsbBroad304_15282 pLX_304 0% 31.7% V5 (many diffs) n/a
9 TRCN0000469491 AAATCTAACGTTAGACAGGGAAAT pLX_317 16.1% 31.3% V5 (not translated due to frame shift) (many diffs) n/a
10 ccsbBroadEn_12247 pDONR223 100% 29.5% None (many diffs) n/a
11 ccsbBroad304_12247 pLX_304 0% 29.5% V5 (many diffs) n/a
12 TRCN0000475390 TTACACTGAACGGGCTATGATCAG pLX_317 19.6% 29.5% V5 (many diffs) n/a
13 ccsbBroadEn_12795 pDONR223 100% 15.6% None (many diffs) n/a
14 ccsbBroad304_12795 pLX_304 0% 15.6% V5 (many diffs) n/a
15 TRCN0000466247 ATCAGCAGGTCACACTGTTGAGTG pLX_317 41.2% 15.6% V5 (many diffs) n/a
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