Construct: ORF ccsbBroad304_12663

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003496.1_s304c1, BRDN0000409689
Derived from:
ccsbBroadEn_12663
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PANK2 (80025)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_12663
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 80025 PANK2 pantothenate kinase 2 NM_001324193.2 100% 100%
2 human 80025 PANK2 pantothenate kinase 2 XM_017028077.2 100% 100%
3 human 80025 PANK2 pantothenate kinase 2 XM_017028078.2 100% 100%
4 human 80025 PANK2 pantothenate kinase 2 XM_017028079.2 100% 100%
5 human 80025 PANK2 pantothenate kinase 2 XM_024452002.1 100% 100%
6 human 80025 PANK2 pantothenate kinase 2 NM_001324191.2 48% 48% 1_435del
7 human 80025 PANK2 pantothenate kinase 2 NM_024960.6 48% 48% 1_435del
8 human 80025 PANK2 pantothenate kinase 2 NM_153640.3 48% 48% 1_435del
9 human 80025 PANK2 pantothenate kinase 2 XM_005260836.4 48% 48% 1_435del
10 human 80025 PANK2 pantothenate kinase 2 XM_005260835.3 36.7% 36.7% 1_693del
11 human 80025 PANK2 pantothenate kinase 2 XM_011529364.3 24.9% 21.2% (many diffs)
12 human 80025 PANK2 pantothenate kinase 2 NM_153638.3 23.5% 23.5% 1_1308del
13 human 80025 PANK2 pantothenate kinase 2 NR_136715.2 5.1% 1_879del;1282_7877del
14 human 80025 PANK2 pantothenate kinase 2 XR_002958533.1 3.2% 1_2096del;2499_12294del
15 mouse 74450 Pank2 pantothenate kinase 2 XM_017319300.1 90.3% 98.5% (many diffs)
16 mouse 74450 Pank2 pantothenate kinase 2 XM_017319299.1 61.7% 67.3% (many diffs)
17 mouse 74450 Pank2 pantothenate kinase 2 XM_006500298.3 43.4% 47.3% (many diffs)
18 mouse 74450 Pank2 pantothenate kinase 2 XM_006500299.3 43.4% 47.3% (many diffs)
19 mouse 74450 Pank2 pantothenate kinase 2 XM_017319298.1 43.4% 47.3% (many diffs)
20 mouse 74450 Pank2 pantothenate kinase 2 NM_153501.2 27.3% 29.7% (many diffs)
21 mouse 74450 Pank2 pantothenate kinase 2 XR_001783191.1 8.2% (many diffs)
22 mouse 74450 Pank2 pantothenate kinase 2 XR_001783192.1 5.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
468
ORF length:
402
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggc atctcgtgga gatagcacca aagtggataa actagtacga gatatttatg
121gaggggacta tgagaggttt ggactgccag gctgggctgt ggcttcaagc tttggaaaca
181tgatgagcaa ggagaagcga gaggctgtca gtaaagagga cctggccaga gcgactttga
241tcaccatcac caacaacatt ggctcaatag caagaatgtg tgcccttaat gaaaacatta
301accaggtggt atttgttgga aatttcttga gaattaatac gatcgccatg cggcttttgg
361catatgcttt ggattattgg tccaaggggc agttgaaagc acttttttcg gaacacgagg
421gttattttgg agctgttgga gcactccttg agctgttgaa gatcccgtgc ccaactttct
481tgtacaaagt ggttggtaag cctatcccta accctctcct cggtctcgat tctacgtagt
541aatgagctag cgctaaccgg tggcgcgtta agtcgacaat caacctctgg atta

Download FASTA (ORF) (Full)