Construct: ORF ccsbBroad304_13575

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001340.1_s304c1, BRDN0000401614
Derived from:
ccsbBroadEn_13575
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
KRT73 (319101)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_13575
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 319101 KRT73 keratin 73 NM_175068.3 69.5% 68.3% (many diffs)
2 human 319101 KRT73 keratin 73 XM_011538257.2 63.6% 62.4% (many diffs)
3 human 112802 KRT71 keratin 71 NM_033448.3 63.3% 62.8% (many diffs)
4 human 112802 KRT71 keratin 71 XM_017018749.1 49.1% 48.9% (many diffs)
5 human 140807 KRT72 keratin 72 XM_017018836.1 45.8% 43.4% (many diffs)
6 human 140807 KRT72 keratin 72 XM_017018835.1 45.2% 36.4% (many diffs)
7 human 319101 KRT73 keratin 73 XR_001748677.1 33.5% (many diffs)
8 mouse 56735 Krt71 keratin 71 NM_019956.1 61.2% 61.3% (many diffs)
9 mouse 223915 Krt73 keratin 73 NM_212485.2 59.9% 59% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1212
ORF length:
1143
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat gagccgccaa ttcacctaca agtcgggacc tgctgccaag gggggcttca
121gcggctgctc cgctgtgctc tcagggggca gctcatcctc ctaccgagca gggggcaaag
181ggctcagtgg aggcttcagc agtcggagcc tttacagcct ggggggtgcc cggagcatct
241ctttcaatgt ggccagtggc agtgggtggg caggaggcta tggatttggc cggggccggg
301ccagtggctt tgctggcagc atgtttggca gtgtggcctt ggggtccgtg tgtccgtcgt
361tgtgcccgcc cgggggtatc catcaggtca ccatcaacaa gagcctcctg gcacccctga
421acgtggagct ggaccctgaa atccagaaag tgcgtgccca ggagcgggag cagatcaagg
481tgctgaacaa caagttcgcc tccttcattg acaaggtgcg gttcctggag cagcagaacc
541aggtgctgga gaccaagtgg gagctgctac agcagctgga cctgaacaac tgcaagaata
601acctggagcc catccttgag ggctacatca gcaacctgcg gaagcagctg gagacgctgt
661ctggggacag ggtgaggctg gactcggagc tgaggagcgt gcgcgaagtg gtggaggact
721acaagaagag gtatgaagaa gaaataaaca agcgcacaac tgctgagaat gaatttgtgg
781tgcttaagaa ggacgtggac gcagcttaca cgagcaaagt ggagctgcag gccaaggtgg
841atgccctgga tggagaaatc aagttcttca agtgtctgta cgagggggag actgctcaga
901tccagtccca catcagcgac acgtccatca tcctgtccat ggacaacaac cggaacctgg
961acctggacag catcattgct gaggtccgtg cccagtatga ggagatcgcc cggaagagca
1021aggccgaggc cgaggccctg taccagacca agttccagga gctgcagcta gcagccggcc
1081ggcatgggga tgacctgaaa cacaccaaaa atgagatctc agagctgacc cgtctcatcc
1141aaagactgcg ctcggagatt gagagtgtga agaagcaggt gaaggggact ggagccttcc
1201ttactcactc cttgccaact ttcttgtaca aagtggttgg taagcctatc cctaaccctc
1261tcctcggtct cgattctacg tagtaatgag ctagcgctaa ccggtggcgc gttaagtcga
1321caatcaacct ctggatta

Download FASTA (ORF) (Full)