Construct: ORF ccsbBroad304_13698

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006266.1_s304c1, BRDN0000408216
Derived from:
ccsbBroadEn_13698
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
SPDYE7P (441251)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_13698
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 285955 SPDYE1 speedy/RINGO cell cycle reg... XM_017012016.2 73.9% 71.5% (many diffs)
2 human 100505767 SPDYE18 speedy/RINGO cell cycle reg... NM_001351348.1 71.8% 64.5% (many diffs)
3 human 100996746 SPDYE11 speedy/RINGO cell cycle reg... NM_001351349.1 70% 64.5% (many diffs)
4 human 102723849 SPDYE17 speedy/RINGO cell cycle reg... NM_001351351.1 70% 64.5% (many diffs)
5 human 285955 SPDYE1 speedy/RINGO cell cycle reg... XM_017012017.2 68.9% 57.7% (many diffs)
6 human 102723555 SPDYE16 speedy/RINGO cell cycle reg... NM_001351597.1 65.4% 63.1% (many diffs)
7 human 102723555 SPDYE16 speedy/RINGO cell cycle reg... XM_017012887.2 65.4% 63.1% (many diffs)
8 human 388333 SPDYE4 speedy/RINGO cell cycle reg... NM_001128076.3 60.3% 53% (many diffs)
9 human 388333 SPDYE4 speedy/RINGO cell cycle reg... XM_005256633.4 60.3% 53% (many diffs)
10 human 285955 SPDYE1 speedy/RINGO cell cycle reg... NM_175064.2 60.1% 58.1% (many diffs)
11 human 100996746 SPDYE11 speedy/RINGO cell cycle reg... XM_024446630.1 59.2% 48.4% (many diffs)
12 human 441251 SPDYE7P speedy/RINGO cell cycle reg... NR_003666.2 58.6% 1_144del;769_1064del
13 human 285955 SPDYE1 speedy/RINGO cell cycle reg... XM_005249719.3 53.7% 51.9% (many diffs)
14 human 285955 SPDYE1 speedy/RINGO cell cycle reg... XM_017012015.1 53.7% 51.9% (many diffs)
15 human 442590 SPDYE5 speedy/RINGO cell cycle reg... NM_001306141.1 50.5% 48.2% (many diffs)
16 human 441273 SPDYE2 speedy/RINGO cell cycle reg... NM_001031618.3 50.2% 48% (many diffs)
17 human 100310812 SPDYE2B speedy/RINGO cell cycle reg... NM_001166339.1 50.2% 48% (many diffs)
18 human 100310812 SPDYE2B speedy/RINGO cell cycle reg... XM_005250093.4 50.2% 48% (many diffs)
19 human 441273 SPDYE2 speedy/RINGO cell cycle reg... XM_017012223.1 50.2% 48% (many diffs)
20 human 729597 SPDYE6 speedy/RINGO cell cycle reg... NM_001146210.4 50.1% 48% (many diffs)
21 human 100310812 SPDYE2B speedy/RINGO cell cycle reg... XM_011515702.3 47.1% 43.4% (many diffs)
22 human 441273 SPDYE2 speedy/RINGO cell cycle reg... XM_011516237.3 47.1% 43.4% (many diffs)
23 human 441272 SPDYE3 speedy/RINGO cell cycle reg... NM_001004351.5 34.4% 31.4% (many diffs)
24 human 441272 SPDYE3 speedy/RINGO cell cycle reg... XM_011516234.3 31.6% 25.9% (many diffs)
25 human 441272 SPDYE3 speedy/RINGO cell cycle reg... XM_011516235.3 31.6% 25.9% (many diffs)
26 human 641776 SPDYE14P speedy/RINGO cell cycle reg... NR_146072.1 24.7% (many diffs)
27 human 105180390 SPDYE13P speedy/RINGO cell cycle reg... NR_146073.1 24.7% (many diffs)
28 human 105180391 SPDYE15P speedy/RINGO cell cycle reg... NR_146074.1 24.7% (many diffs)
29 human 643862 SPDYE10P speedy/RINGO cell cycle reg... NR_146079.1 19.7% (many diffs)
30 human 728524 SPDYE8P speedy/RINGO cell cycle reg... NR_003664.2 19.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
693
ORF length:
624
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat ggagtggtgg gacaaatctg aggagtcgtt ggaggaggag ccacggaagg
121tgctcgcccc tgagcctgag gagatctggg tggcggagat gctgtgtggc ctcaagatga
181agctgaagcg acggcgagtg tcgctcgtgc tccctgagca ccacgaggcc ttcaacaggc
241tgcttgagga tcctgtcatt aaaagattcc tggcctggga caaaggtctg agggtgtcgg
301acaagtatct cctggctatg gtcatagtgt atttcagccg ggccggcctc ccctcctggc
361aataccaatg cattcatttc ttcctggctc tctacctggc caatgacatg gaggaggacg
421acgaggaccc caaacaaaac atcttctact tcctgtatgg gaagacccgc tctcgcatac
481ccttgctccg taagcgtcgg ttccagttat gccgttgcat gaacccgagg gccaggaaga
541accgctctca gatagtcctg ttccagaaac ttcggttcca gttcttctgt tccatgagct
601gcagggcttg ggtttccccg gaggagttgg aggagatcca ggcttatgac ccagagcact
661gggtgtgggc gcgagatcgc gctcgccttt ccttgccaac tttcttgtac aaagtggttg
721gtaagcctat ccctaaccct ctcctcggtc tcgattctac gtagtaatga gctagcgcta
781accggtggcg cgttaagtcg acaatcaacc tctggatta

Download FASTA (ORF) (Full)