Construct: ORF ccsbBroad304_14034

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF017731.1_s304c1, BRDN0000461448
Derived from:
ccsbBroadEn_14034
DNA Barcode:
None
Epitope Tag:
V5 (not translated due to frame shift)
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ABI1 (10006)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_14034
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 10006 ABI1 abl interactor 1 NM_001012752.2 99.9% 99.3% 1419delC
2 human 10006 ABI1 abl interactor 1 XM_005252333.4 99.7% 99.1% 802_803insCAG;1416delC
3 human 10006 ABI1 abl interactor 1 NM_001012750.2 98.8% 98.3% 459_473del;1434delC
4 human 10006 ABI1 abl interactor 1 NM_001178119.1 98.6% 98.1% 459_473del;817_818insCAG;1431delC
5 human 10006 ABI1 abl interactor 1 XM_005252332.4 94.5% 94% 804_884del;1500delC
6 human 10006 ABI1 abl interactor 1 NM_001348030.1 93.8% 93.2% 981_982ins87;1332delC
7 human 10006 ABI1 abl interactor 1 NM_001348029.1 93.7% 93% 459_473del;821_899delinsC;1512delC
8 human 10006 ABI1 abl interactor 1 NM_005470.3 93.6% 93.1% 459_473del;819_899del;1515delC
9 human 10006 ABI1 abl interactor 1 NM_001178121.1 93.6% 93% 802_803insCAG;978_979ins87;1329delC
10 human 10006 ABI1 abl interactor 1 NM_001012751.2 92.8% 92.3% 459_473del;996_997ins87;1347delC
11 human 10006 ABI1 abl interactor 1 NM_001178120.1 92.6% 92% (many diffs)
12 human 10006 ABI1 abl interactor 1 NM_001348034.1 89.3% 86.7% (many diffs)
13 human 10006 ABI1 abl interactor 1 NM_001348033.1 88% 87.3% (many diffs)
14 human 10006 ABI1 abl interactor 1 NM_001348032.1 87.9% 87.4% (many diffs)
15 human 10006 ABI1 abl interactor 1 NM_001178122.1 86.6% 85.8% 459_473del;820_821ins177;1257delC
16 human 10006 ABI1 abl interactor 1 NM_001178116.1 85% 84.5% (many diffs)
17 human 10006 ABI1 abl interactor 1 NM_001348031.1 84.9% 81.5% (many diffs)
18 human 10006 ABI1 abl interactor 1 NM_001178124.1 81.4% 80.6% 805_806ins264;1155delC
19 human 10006 ABI1 abl interactor 1 NM_001178123.1 80.5% 79.8% 459_473del;820_821ins264;1170delC
20 human 10006 ABI1 abl interactor 1 NM_001178125.1 69% 68.2% 283_284ins177;628_629ins264;978delC
21 human 10006 ABI1 abl interactor 1 XM_011519289.2 60.8% 57.5% (many diffs)
22 human 10006 ABI1 abl interactor 1 XM_017015459.1 57.6% 54.2% (many diffs)
23 human 10006 ABI1 abl interactor 1 NR_145410.1 37.8% (many diffs)
24 mouse 11308 Abi1 abl-interactor 1 NM_145994.3 92.2% 97.6% (many diffs)
25 mouse 11308 Abi1 abl-interactor 1 NM_007380.4 92% 97.4% (many diffs)
26 mouse 11308 Abi1 abl-interactor 1 NM_001077190.3 91.3% 96.6% (many diffs)
27 mouse 11308 Abi1 abl-interactor 1 NM_001331043.1 91.1% 96.4% (many diffs)
28 mouse 11308 Abi1 abl-interactor 1 NM_001077192.3 86.3% 91.5% (many diffs)
29 mouse 11308 Abi1 abl-interactor 1 NM_001331044.1 85.7% 90.8% (many diffs)
30 mouse 11308 Abi1 abl-interactor 1 NM_001331045.1 85.5% 90.6% (many diffs)
31 mouse 11308 Abi1 abl-interactor 1 NM_001077193.3 75% 79.6% (many diffs)
32 mouse 11308 Abi1 abl-interactor 1 XM_006497619.1 74.2% 78.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1494
ORF length:
1428
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggc agagctgcag atgttactag aggaggagat cccgtctggc aagagggcgc
121tgatcgagag ttaccagaac ctgactcggg tggcagacta ctgtgaaaac aactacatac
181aggctacaga caagagaaaa gctttagagg agaccaaagc ctatacaacc caatctctag
241ctagtgttgc ttatcaaata aatgcattgg ccaacaatgt actccagttg ctggatatcc
301aagcctctca gcttcggaga atggagtctt ccatcaatca tatctcacag actgtggata
361ttcataagga gaaagtggca cgaagagaga ttggtatttt gacaacaaat aagaatacat
421caagaactca caaaataata gcacctgcga atatggagcg ccctgtaagg tatattcgga
481aacctatcga ttacacagtt ctggatgatg tgggccatgg tgtcaagcat ggaaataacc
541agcctgcaag aactggcaca ctgtcgagaa caaatcctcc tactcagaaa ccgccaagtc
601ctcccatgtc aggccgggga acactgggac ggaatactcc ttataaaacc ctggaacctg
661ttaaaccccc aacagttcct aatgactata tgaccagtcc tgctaggctt ggaagtcagc
721atagtccagg caggacagca tctttaaatc agagaccaag gacacacagt ggaagtagtg
781gaggaagtgg aagtcgagaa aacagtggta gcagtagtat tggcattccc attgctgtgc
841ctacaccttc gccacccact attggaccag cagccccggg ctcagctcct ggttcccagt
901atggcacaat gaccaggcag atatctcgac acaactctac tacttcttcg acatcttctg
961gtggatacag acgaactccc tctgtgactg ctcaattttc tgctcagcct catgttaatg
1021gaggtccact ttattctcaa aattcaattt ctattgctcc accccctccc cctatgcctc
1081agttgactcc acagatacct ctcacaggct tcgtggccag ggtgcaggaa aacattgctg
1141atagtccaac tccaccgcca ccacctccac cagatgacat tcccatgttt gatgactctc
1201cacctccccc accaccacca ccagtggatt atgaagatga ggaggctgca gtagttcagt
1261ataatgatcc atatgcagat ggggatcctg cttgggcccc caagaattat attgagaaag
1321ttgttgcaat atatgattat acaaaagaca aggatgatga gctgtcattt atggagggtg
1381caatcattta tgttataaag aagaatgatg atggctggta tgaaggagtc tgcaatcgag
1441tgactggtct gttccctggg aactatgttg aatcaatcat gcatatactg attacccaac
1501tttcttgtac aaagtggttg gtaagcctat ccctaaccct ctcctcggtc tcgattctac
1561gtagtaatga gctagcgcta accggtggcg cgttaagtcg acaatcaacc tctggatta

Download FASTA (ORF) (Full)

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