Transcript: Human XM_005252332.4

PREDICTED: Homo sapiens abl interactor 1 (ABI1), transcript variant X1, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
ABI1 (10006)
Length:
3313
CDS:
124..1635

Additional Resources:

NCBI RefSeq record:
XM_005252332.4
NBCI Gene record:
ABI1 (10006)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_005252332.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000427455 CTAACGCTATGTCAGACTAAT pLKO_005 1982 3UTR 100% 13.200 18.480 N ABI1 n/a
2 TRCN0000424081 TATTCGGAAACCTATCGATTA pLKO_005 531 CDS 100% 10.800 15.120 N ABI1 n/a
3 TRCN0000158272 CCACCACCAGTGGATTATGAA pLKO.1 1354 CDS 100% 5.625 7.875 N ABI1 n/a
4 TRCN0000153304 GCCTATACAACCCAATCTCTA pLKO.1 277 CDS 100% 4.950 6.930 N ABI1 n/a
5 TRCN0000417741 CACGAAGAGAGATTGGTATTT pLKO_005 437 CDS 100% 13.200 9.240 N ABI1 n/a
6 TRCN0000150977 CCAACAGTTCCTAATGACTAT pLKO.1 727 CDS 100% 4.950 3.465 N ABI1 n/a
7 TRCN0000157985 CCTCAGTTGACTCCACAGATA pLKO.1 1216 CDS 100% 4.950 3.465 N ABI1 n/a
8 TRCN0000018497 TGTTGAATCAATCATGCACTA pLKO.1 1605 CDS 100% 4.050 2.835 N Abi1 n/a
9 TRCN0000153710 CAGTAGTATTGGCATTCCCAT pLKO.1 870 CDS 100% 2.640 1.848 N ABI1 n/a
10 TRCN0000018496 CGACATCTTCTGGTGGATATA pLKO.1 1088 CDS 100% 13.200 18.480 N Abi1 n/a
11 TRCN0000321712 CGACATCTTCTGGTGGATATA pLKO_005 1088 CDS 100% 13.200 18.480 N Abi1 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_005252332.4, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_14034 pDONR223 100% 94.5% 94% None 804_884del;1500delC n/a
2 ccsbBroad304_14034 pLX_304 0% 94.5% 94% V5 (not translated due to frame shift) 804_884del;1500delC n/a
3 TRCN0000481323 TCTTTGTGCACTTCCTTGTCAAAT pLX_317 29.3% 94.5% 94% V5 (not translated due to frame shift) 804_884del;1500delC n/a
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