Construct: ORF ccsbBroad304_14147

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF016068.1_s304c1, BRDN0000398692
Derived from:
ccsbBroadEn_14147
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ARL17A (51326)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_14147
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 51326 ARL17A ADP ribosylation factor lik... XM_011524876.3 41.6% 41.3% 1_342del;350A>C
2 human 51326 ARL17A ADP ribosylation factor lik... XM_017024729.2 41.6% 41.3% 1_342del;350A>C
3 human 100996709 LOC100996709 ADP-ribosylation factor-lik... XM_017030176.1 41.4% 41.3% 1_342del;350A>C;375T>C
4 human 107984156 LOC107984156 ADP-ribosylation factor-lik... XM_017030180.2 41.4% 40.8% 1_342del;350A>C;587G>C
5 human 107984156 LOC107984156 ADP-ribosylation factor-lik... XM_017030179.2 37.5% 37% (many diffs)
6 human 107984156 LOC107984156 ADP-ribosylation factor-lik... XM_011546367.3 35.2% 30% (many diffs)
7 human 100996709 LOC100996709 ADP-ribosylation factor-lik... XM_011546387.2 35% 30% (many diffs)
8 human 51326 ARL17A ADP ribosylation factor lik... XM_011524875.3 34.9% 30% (many diffs)
9 human 100506084 ARL17B ADP ribosylation factor lik... NM_001363805.1 32.8% 31.1% (many diffs)
10 human 51326 ARL17A ADP ribosylation factor lik... XM_011524877.3 32.8% 31.1% (many diffs)
11 human 107984156 LOC107984156 ADP-ribosylation factor-lik... XM_011546369.3 32.8% 31.1% (many diffs)
12 human 100996709 LOC100996709 ADP-ribosylation factor-lik... XM_011546389.2 32.7% 31.1% (many diffs)
13 human 100506084 ARL17B ADP ribosylation factor lik... NM_001039083.4 31.6% 31.1% (many diffs)
14 human 51326 ARL17A ADP ribosylation factor lik... NM_001113738.1 31.6% 31.1% (many diffs)
15 human 105376844 LOC105376844 uncharacterized LOC105376844 XR_934912.3 25.3% (many diffs)
16 human 105376844 LOC105376844 uncharacterized LOC105376844 XR_934914.3 24.6% (many diffs)
17 human 107984156 LOC107984156 ADP-ribosylation factor-lik... XR_001756211.2 23.8% (many diffs)
18 human 51326 ARL17A ADP ribosylation factor lik... XR_934477.3 23.6% (many diffs)
19 human 107985086 LOC107985086 uncharacterized LOC107985086 XR_001752899.1 22.9% (many diffs)
20 human 107984156 LOC107984156 ADP-ribosylation factor-lik... XR_001756214.1 22.5% (many diffs)
21 human 100996709 LOC100996709 ADP-ribosylation factor-lik... XR_951555.2 22.5% (many diffs)
22 human 105369225 LOC105369225 uncharacterized LOC105369225 XR_001756625.2 21.8% (many diffs)
23 human 51326 ARL17A ADP ribosylation factor lik... XR_934479.2 21.5% (many diffs)
24 human 105369225 LOC105369225 uncharacterized LOC105369225 XR_001752910.2 21.3% (many diffs)
25 human 105369225 LOC105369225 uncharacterized LOC105369225 XR_001756626.2 21.3% (many diffs)
26 human 101929774 LOC101929774 uncharacterized LOC101929774 XR_951561.3 21.1% (many diffs)
27 human 51326 ARL17A ADP ribosylation factor lik... XR_934475.3 21% (many diffs)
28 human 101929774 LOC101929774 uncharacterized LOC101929774 XR_951565.2 20.6% (many diffs)
29 human 51326 ARL17A ADP ribosylation factor lik... XR_934476.3 20.1% (many diffs)
30 human 100996709 LOC100996709 ADP-ribosylation factor-lik... XR_951553.3 19.1% (many diffs)
31 human 107984156 LOC107984156 ADP-ribosylation factor-lik... XR_001756217.1 19.1% (many diffs)
32 human 100996709 LOC100996709 ADP-ribosylation factor-lik... XR_951558.2 19% (many diffs)
33 human 10230 NBR2 neighbor of BRCA1 lncRNA 2 NR_138145.1 17.3% (many diffs)
34 human 107984156 LOC107984156 ADP-ribosylation factor-lik... XR_002958881.1 15.8% (many diffs)
35 human 100996709 LOC100996709 ADP-ribosylation factor-lik... XR_001756189.1 15.5% (many diffs)
36 human 10230 NBR2 neighbor of BRCA1 lncRNA 2 NR_003108.2 15% (many diffs)
37 human 107984156 LOC107984156 ADP-ribosylation factor-lik... XR_001756215.1 14.8% (many diffs)
38 human 100996709 LOC100996709 ADP-ribosylation factor-lik... XR_951557.2 14.7% (many diffs)
39 human 107984156 LOC107984156 ADP-ribosylation factor-lik... XR_001756210.2 14.6% (many diffs)
40 human 107984156 LOC107984156 ADP-ribosylation factor-lik... XR_001756213.2 13.6% (many diffs)
41 human 100996709 LOC100996709 ADP-ribosylation factor-lik... XR_951554.2 13.6% (many diffs)
42 human 100996709 LOC100996709 ADP-ribosylation factor-lik... XR_951556.2 11.4% (many diffs)
43 human 105376844 LOC105376844 uncharacterized LOC105376844 XR_934913.3 11.4% (many diffs)
44 human 51326 ARL17A ADP ribosylation factor lik... XR_934478.3 11% (many diffs)
45 human 51326 ARL17A ADP ribosylation factor lik... XR_934480.3 9.4% (many diffs)
46 human 107984156 LOC107984156 ADP-ribosylation factor-lik... XR_001756212.2 9.1% (many diffs)
47 human 107984156 LOC107984156 ADP-ribosylation factor-lik... XR_001756216.2 8.3% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
312
ORF length:
246
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgtg gacaggaggt agaagtcatc ctttcctccc ccatagcagc aggtgtgcag
121gctctggtgg tcagctggac tccatactcc cccaccagtc accagcctgg ggaccgtggg
181gctgcaagga cctcagcagc ggtttcccaa gtttcctgac ttcttccatc ctctggaaat
241cagctgtggt tcgtgagcca cacatctccc cacaccaagc tcctccatac aagacctcgg
301actgcatcac gtacccaact ttcttgtaca aagtggttgg taagcctatc cctaaccctc
361tcctcggtct cgattctacg tagtaatgag ctagcgctaa ccggtggcgc gttaagtcga
421caatcaacct ctggatta

Download FASTA (ORF) (Full)