Construct: ORF ccsbBroad304_14601
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF013253.2_s304c1, BRDN0000459713
- Derived from:
- ccsbBroadEn_14601
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- CSNK1E (1454)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_14601
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 102800317 | TPTEP2-CSNK1E | TPTEP2-CSNK1E readthrough | NM_001289912.2 | 100% | 100% | |
| 2 | human | 1454 | CSNK1E | casein kinase 1 epsilon | NM_001894.4 | 100% | 100% | |
| 3 | human | 1454 | CSNK1E | casein kinase 1 epsilon | NM_152221.3 | 100% | 100% | |
| 4 | human | 1453 | CSNK1D | casein kinase 1 delta | NM_139062.4 | 77.9% | 84.3% | (many diffs) |
| 5 | human | 1453 | CSNK1D | casein kinase 1 delta | NM_001893.6 | 76.9% | 81% | (many diffs) |
| 6 | mouse | 27373 | Csnk1e | casein kinase 1, epsilon | NM_001289898.1 | 90.7% | 98.7% | (many diffs) |
| 7 | mouse | 27373 | Csnk1e | casein kinase 1, epsilon | NM_013767.6 | 90.7% | 98.7% | (many diffs) |
| 8 | mouse | 27373 | Csnk1e | casein kinase 1, epsilon | XM_017316657.1 | 90.7% | 98.7% | (many diffs) |
| 9 | mouse | 27373 | Csnk1e | casein kinase 1, epsilon | XM_017316658.1 | 90.7% | 98.7% | (many diffs) |
| 10 | mouse | 27373 | Csnk1e | casein kinase 1, epsilon | XM_017316659.1 | 90.7% | 98.7% | (many diffs) |
| 11 | mouse | 27373 | Csnk1e | casein kinase 1, epsilon | XM_006521043.3 | 85.4% | 67.9% | (many diffs) |
| 12 | mouse | 27373 | Csnk1e | casein kinase 1, epsilon | XM_011245649.1 | 85.4% | 67.9% | (many diffs) |
| 13 | mouse | 27373 | Csnk1e | casein kinase 1, epsilon | XM_011245650.2 | 85.4% | 67.9% | (many diffs) |
| 14 | mouse | 27373 | Csnk1e | casein kinase 1, epsilon | XM_011245651.1 | 85.4% | 67.9% | (many diffs) |
| 15 | mouse | 27373 | Csnk1e | casein kinase 1, epsilon | XM_011245652.2 | 85.4% | 67.9% | (many diffs) |
| 16 | mouse | 27373 | Csnk1e | casein kinase 1, epsilon | XM_011245653.2 | 85.4% | 67.9% | (many diffs) |
| 17 | mouse | 27373 | Csnk1e | casein kinase 1, epsilon | XM_011245654.2 | 85.4% | 67.9% | (many diffs) |
| 18 | mouse | 27373 | Csnk1e | casein kinase 1, epsilon | NM_001289899.1 | 75.4% | 73.3% | (many diffs) |
| 19 | mouse | 27373 | Csnk1e | casein kinase 1, epsilon | XM_017316660.1 | 75.4% | 73.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1314
- ORF length:
- 1248
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatgga gctacgtgtg gggaacaagt accgcctggg acggaagatc gggagcgggt 121 ccttcggaga tatctacctg ggtgccaaca tcgcctctgg tgaggaagtc gccatcaagc 181 tggagtgtgt gaagacaaag cacccccagc tgcacatcga gagcaagttc tacaagatga 241 tgcagggtgg cgtggggatc ccgtccatca agtggtgcgg agctgagggc gactacaacg 301 tgatggtcat ggagctgctg gggcctagcc tcgaggacct gttcaacttc tgttcccgca 361 aattcagcct caagacggtg ctgctcttgg ccgaccagat gatcagccgc atcgagtata 421 tccactccaa gaacttcatc caccgggacg tcaagcccga caacttcctc atggggctgg 481 ggaagaaggg caacctggtc tacatcatcg acttcggcct ggccaagaag taccgggacg 541 cccgcaccca ccagcacatt ccctaccggg aaaacaagaa cctgaccggc acggcccgct 601 acgcttccat caacacgcac ctgggcattg agcaaagccg tcgagatgac ctggagagcc 661 tgggctacgt gctcatgtac ttcaacctgg gctCCCTGCC CTGGCAGGGG CTCAAAGCAG 721 CCACCAAGCG CCAGAAGTAT GAACGGATCA GCGAGAAGAA GATGTCAACG CCCATCGAGG 781 TCCTCTGCAA AGGCTATCCC TCCGAATTCT CAACATACCT CAACTTCTGC CGCTCCCTGC 841 GGTTTGACGA CAAGCCCGAC TACTCTTACC TACGTCAGCT CTTCCGCAAC CTCTTCCACC 901 GGCAGGGCTT CTCCTATGAC TACGTCTTTG ACTGGAACAT GCTGAAATTC GGTGCAGCCC 961 GGAATCCCGA GGATGTGGAC CGGGAGCGGC GAGAACACGA ACGCGAGGAG AGGATGGGGC 1021 AGCTACGGGG GTCCGCGACC CGAGCCCTGC CCCCTGGCCC ACCCACGGGG GCCACTGCCA 1081 ACCGGCTCCG CAGTGCCGCC GAGCCCGTGG CTTCCACGCC AGCCTCCCGC ATCCAGCCGG 1141 CTGGCAATAC TTCTCCCAGA GCGATCTCGC GGGTCGACCG GGAGAGGAAG GTGAGTATGA 1201 GGCTGCACAG GGGTGCGCCC GCCAACGTCT CCTCCTCAGA CCTCACTGGG CGGCAAGAGG 1261 TCTCCCGGAT CCCAGCCTCA CAGACAAGTG TGCCATTTGA CCATCTCGGG AAGTGCCCAA 1321 CTTTCTTGTA Caaagtggtt ggtaagccta tccctaaccc tctcctcggt ctcgattcta 1381 cgtagtaatg agctagcgct aaccggtggc gcgttaagtc gacaatcaac ctctggatta