Construct: ORF ccsbBroad304_14891

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF013048.2_s304c1, BRDN0000459671
Derived from:
ccsbBroadEn_14891
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PIP5K1A (8394)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_14891
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 8394 PIP5K1A phosphatidylinositol-4-phos... NM_001135637.2 99.9% 100% 930C>T
2 human 8394 PIP5K1A phosphatidylinositol-4-phos... NM_003557.3 91% 91% 930C>T;1325_1471del
3 human 8394 PIP5K1A phosphatidylinositol-4-phos... NM_001330689.2 90.8% 90.9% 83_85delCAG;933C>T;1328_1474del
4 human 8394 PIP5K1A phosphatidylinositol-4-phos... XM_005245528.5 89.2% 89.2% 83_115del;963C>T;1358_1504del
5 human 8394 PIP5K1A phosphatidylinositol-4-phos... XM_005245527.4 89% 89.1% 117_152del;966C>T;1361_1507del
6 human 8394 PIP5K1A phosphatidylinositol-4-phos... NM_001135638.2 88.9% 88.9% (many diffs)
7 human 8394 PIP5K1A phosphatidylinositol-4-phos... XM_006711564.4 88.9% 88.9% 84_122del;969C>T;1364_1510del
8 human 8394 PIP5K1A phosphatidylinositol-4-phos... XM_005245525.5 87.3% 87.4% (many diffs)
9 human 8394 PIP5K1A phosphatidylinositol-4-phos... XM_006711563.4 87% 87.1% (many diffs)
10 human 8394 PIP5K1A phosphatidylinositol-4-phos... XM_017002440.1 86.5% 88.7% 930C>T;1324_1325ins130;1371_1452del
11 human 8394 PIP5K1A phosphatidylinositol-4-phos... XM_017002439.1 86.3% 88.5% (many diffs)
12 human 8394 PIP5K1A phosphatidylinositol-4-phos... XM_011510046.3 85.9% 86% (many diffs)
13 human 8394 PIP5K1A phosphatidylinositol-4-phos... XM_005245532.4 85.8% 85.8% (many diffs)
14 human 8394 PIP5K1A phosphatidylinositol-4-phos... NM_001135636.2 85.7% 85.6% (many diffs)
15 human 8394 PIP5K1A phosphatidylinositol-4-phos... XM_024450130.1 84.7% 84% (many diffs)
16 human 8394 PIP5K1A phosphatidylinositol-4-phos... XM_011510043.3 84.6% 84.5% (many diffs)
17 human 8394 PIP5K1A phosphatidylinositol-4-phos... XM_024450131.1 84.6% 84.6% 0_1ins105;825C>T;1220_1366del
18 human 8394 PIP5K1A phosphatidylinositol-4-phos... XM_006711567.4 84.4% 82.8% (many diffs)
19 human 8394 PIP5K1A phosphatidylinositol-4-phos... XM_011510048.3 84.4% 82.8% (many diffs)
20 human 8394 PIP5K1A phosphatidylinositol-4-phos... XM_011510049.3 84.4% 82.8% (many diffs)
21 human 8394 PIP5K1A phosphatidylinositol-4-phos... XM_017002441.2 84.4% 82.8% (many diffs)
22 human 8394 PIP5K1A phosphatidylinositol-4-phos... XM_011510045.3 84.1% 84.2% (many diffs)
23 human 8394 PIP5K1A phosphatidylinositol-4-phos... XM_005245530.5 84% 84% (many diffs)
24 human 8394 PIP5K1A phosphatidylinositol-4-phos... XM_024450129.1 83% 82.3% (many diffs)
25 human 8394 PIP5K1A phosphatidylinositol-4-phos... XM_006711568.4 82.9% 82.7% (many diffs)
26 human 266971 PIPSL PIP5K1A and PSMD4 like (pse... NR_002319.2 37.5% (many diffs)
27 human 206426 PIP5K1P1 phosphatidylinositol-4-phos... NR_027712.1 33.1% (many diffs)
28 mouse 18720 Pip5k1a phosphatidylinositol-4-phos... XM_017319485.1 86.7% 91.2% (many diffs)
29 mouse 18720 Pip5k1a phosphatidylinositol-4-phos... NM_001293707.1 79.2% 83.3% (many diffs)
30 mouse 18720 Pip5k1a phosphatidylinositol-4-phos... NM_008847.3 79.2% 83.3% (many diffs)
31 mouse 18720 Pip5k1a phosphatidylinositol-4-phos... XR_375499.2 33.7% (many diffs)
32 mouse 18720 Pip5k1a phosphatidylinositol-4-phos... XR_375498.2 33.7% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1566
ORF length:
1500
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggc gtcggcctcc tccgggccgt cgtcttcggt cggtttttca tcctttgatc
121ccgcggtccc ttcctgtacc ttgtcctcag catctggaat caagagaccc atggcatctg
181aggtgcctta tgcctctggc atgcccatca agaaaatagg ccatagaagt gttgattcct
241caggagagac aacatataaa aagacaacct catcagcctt gaaaggtgcc atccagttag
301gcattaccca cactgtgggg agcctgagta ccaaaccaga gcgtgatgtc ctcatgcaag
361atttctacgt ggttgagagt atcttctttc ccagtgaagg gagcaacctg acccctgctc
421atcactacaa tgactttcgt ttcaagacct atgcacctgt tgccttccgc tacttccggg
481agctatttgg tatccggccc gatgattact tgtattccct ctgcagtgag ccgctgattg
541aactctgtag ctctggagct agtggttccc tattctatgt gtccagcgac gatgagttca
601ttattaagac agtccaacat aaagaggcgg aatttctgca gaagctgctt ccaggatact
661acatgaacct caaccagaac cctcggactt tgctgcctaa attctatgga ctgtactgtg
721tgcaggcagg tggcaagaac attcggattg tggtgatgaa caatctttta ccaagatcgg
781taaaaatgca tatcaaatat gacctcaaag gctcaaccta caaacggcgg gcttcccaga
841aagagcgaga gaagcctctt cccacattta aagacctaga cttcttacaa gacatccctg
901atggtctttt tttggatgct gacatgtaca acgctctctg taagaccctg cagcgtgact
961gtttggtgct gcagagcttc aagataatgg attatagcct cttgatgtca atccataata
1021tagatcatgc acaacgagag cccttaagca gtgaaacaca gtactcagtt gatactcgaa
1081gaccggcccc ccaaaaggct ctgtattcca cagccatgga atccatccag ggagaggctc
1141gacggggtgg taccatggag actgatgacc atatgggtgg catccctgcc cggaatagta
1201aaggggaaag gcttctgctt tatattggca tcattgacat tctacagtct tacaggtttg
1261ttaagaagtt ggagcactct tggaaagccc tggtacatga cggagacact gtctcagtgc
1321atcgcccagg cttctacgct gaacggttcc agcgcttcat gtgcaacaca gtatttaaga
1381agattccctg cgttcacctt ggtcgtcctg atgttttacc tcagactcca cctttggagg
1441aaatcagtga gggctcgcct attcctgacc ccagtttctc acctctagtt ggagagactt
1501tgcaaatgct aactacaagt acaaccttgg aaaagcttga agttgcagag tcagagttca
1561cccattaccc aactttcttg tacaaagtgg ttggtaagcc tatccctaac cctctcctcg
1621gtctcgattc tacgtagtaa tgagctagcg ctaaccggtg gcgcgttaag tcgacaatca
1681acctctggat ta

Download FASTA (ORF) (Full)