Construct: ORF ccsbBroad304_15038

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF018896.1_s304c1, BRDN0000459380
Derived from:
ccsbBroadEn_15038
DNA Barcode:
None
Epitope Tag:
V5 (not translated due to prior stop codon)
Notes:
Early stop codon detected

Originally Annotated References:

Gene:
RPS6KC1 (26750)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_15038
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 26750 RPS6KC1 ribosomal protein S6 kinase C1 NM_012424.6 99% 20.5% (many diffs)
2 human 26750 RPS6KC1 ribosomal protein S6 kinase C1 NM_001136138.3 97.9% 19.4% (many diffs)
3 human 26750 RPS6KC1 ribosomal protein S6 kinase C1 NM_001349646.1 96.1% 21.1% (many diffs)
4 human 26750 RPS6KC1 ribosomal protein S6 kinase C1 NM_001349647.1 88.5% 18.2% (many diffs)
5 human 26750 RPS6KC1 ribosomal protein S6 kinase C1 NM_001287221.2 82.1% 3.5% (many diffs)
6 human 26750 RPS6KC1 ribosomal protein S6 kinase C1 NM_001349648.1 82.1% 3.5% (many diffs)
7 human 26750 RPS6KC1 ribosomal protein S6 kinase C1 NM_001349649.1 82.1% 3.5% (many diffs)
8 human 26750 RPS6KC1 ribosomal protein S6 kinase C1 NM_001349650.1 82.1% 3.5% (many diffs)
9 human 26750 RPS6KC1 ribosomal protein S6 kinase C1 NM_001349651.1 82.1% 3.5% (many diffs)
10 human 26750 RPS6KC1 ribosomal protein S6 kinase C1 NM_001349652.1 82.1% 3.5% (many diffs)
11 human 26750 RPS6KC1 ribosomal protein S6 kinase C1 NM_001349653.1 82.1% 3.5% (many diffs)
12 human 26750 RPS6KC1 ribosomal protein S6 kinase C1 NM_001287218.2 79.2% 3.6% (many diffs)
13 human 26750 RPS6KC1 ribosomal protein S6 kinase C1 NM_001287219.2 79.2% 3.6% (many diffs)
14 human 26750 RPS6KC1 ribosomal protein S6 kinase C1 NM_001349654.1 79.2% 3.6% (many diffs)
15 human 26750 RPS6KC1 ribosomal protein S6 kinase C1 XM_017001024.1 78.8% 3.6% (many diffs)
16 human 26750 RPS6KC1 ribosomal protein S6 kinase C1 NM_001349657.1 72% 6.3% (many diffs)
17 human 26750 RPS6KC1 ribosomal protein S6 kinase C1 NM_001349658.1 72% 6.3% (many diffs)
18 human 26750 RPS6KC1 ribosomal protein S6 kinase C1 NM_001349659.1 66.8% 6.8% (many diffs)
19 human 26750 RPS6KC1 ribosomal protein S6 kinase C1 NM_001349660.1 66.8% 6.8% (many diffs)
20 human 26750 RPS6KC1 ribosomal protein S6 kinase C1 NM_001349661.1 66.8% 6.8% (many diffs)
21 human 26750 RPS6KC1 ribosomal protein S6 kinase C1 NM_001349662.1 66.8% 6.8% (many diffs)
22 human 26750 RPS6KC1 ribosomal protein S6 kinase C1 XM_017001030.1 66.8% 6.8% (many diffs)
23 human 26750 RPS6KC1 ribosomal protein S6 kinase C1 NM_001287220.2 56.2% 8% (many diffs)
24 human 26750 RPS6KC1 ribosomal protein S6 kinase C1 NM_001349663.1 56.2% 8% (many diffs)
25 human 26750 RPS6KC1 ribosomal protein S6 kinase C1 NM_001349664.1 56.2% 8% (many diffs)
26 human 26750 RPS6KC1 ribosomal protein S6 kinase C1 NM_001349665.1 56.2% 8% (many diffs)
27 human 26750 RPS6KC1 ribosomal protein S6 kinase C1 NM_001349666.1 56.2% 8% (many diffs)
28 human 26750 RPS6KC1 ribosomal protein S6 kinase C1 NM_001349667.1 56.2% 8% (many diffs)
29 human 26750 RPS6KC1 ribosomal protein S6 kinase C1 NM_001349668.1 56.2% 8% (many diffs)
30 human 26750 RPS6KC1 ribosomal protein S6 kinase C1 NM_001349669.1 56.2% 8% (many diffs)
31 human 26750 RPS6KC1 ribosomal protein S6 kinase C1 NM_001349670.1 56.2% 8% (many diffs)
32 human 26750 RPS6KC1 ribosomal protein S6 kinase C1 NM_001349671.1 56.2% 8% (many diffs)
33 human 26750 RPS6KC1 ribosomal protein S6 kinase C1 NR_146207.1 54.8% (many diffs)
34 human 26750 RPS6KC1 ribosomal protein S6 kinase C1 NR_146210.1 53.7% (many diffs)
35 human 26750 RPS6KC1 ribosomal protein S6 kinase C1 NM_001349672.1 53.4% 8.3% (many diffs)
36 human 26750 RPS6KC1 ribosomal protein S6 kinase C1 NR_146209.1 51.7% (many diffs)
37 human 26750 RPS6KC1 ribosomal protein S6 kinase C1 NR_146208.1 46.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
756
ORF length:
687
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat gacctcttac cgggagcgga gtgccgacct ggcccgtttc tacactgtca
121ccgagcccca gcgacacccg aggggctaca cagtatataa ggtcaccgcc cgggttgttt
181cacgaagaaa tccagaggat gtccaggaga taattgtatg gaagagatac agtgatttta
241agaaactaca caaagaacta tggcaaattc acaaaaactt attccgacat tcagagttgt
301ttcctccatt tgctaaagga atagtgtttg ggcgatttga tgaaactgtt atcgaagaga
361gaagacaatg tgctgaagac ctgctacagt tctctgccaa tattcctgct ctttacaata
421gtaaacagct tgaagacttt ttcaagggtg gaataattaa tgatagttct gaattaattg
481gtcctgctga agctcactca gattccctca ttgatacctt tcctgagtgt agtacggaag
541gcttctccag tgacagtgat ctggtatctc ttactgttga tgtggattct cttgctgagt
601tagatgatgg aatggcttcc aatcaaaatt ctcccattag aacttttggt ctcaatcttt
661cttcggattc ttcagcacta ggggctgttg cttctgacag tgaacagagc aaaacagaag
721agaacgggaa agtcgtagcc tctttcctgg cagtttaaag ccgaagcttg cagagagatt
781atttggagaa agcagagaat taataagctg gctttaaaaa gagagagacg actatgagct
841gcttctgatt tttataggaa ggagttgatt tactcctaga aggtgttcaa ggagagtcaa
901gccctacccg tcgagaagct gtgaagagaa gaacagccga gtacctcatg cgggcagaaa
961gtatctctag tctttatggg aaacctcagc ttgatgatgt atctcagcct ccaggatcac
1021taagttcaag gcccctttgg aacctaagga gccctgccga ggagctgaag gccttcagag
1081tccttggggt gattgacaag gttttacttg taatggacac aaggacagaa cagactttca
1141ttttaaaagg tctaaggaaa agcagtgaat acagcaggaa cagaaagacc atcatccccc
1201gctgtgtgcc caacatggtg tgtctgcata agtacatcat ctctgaggag tcagtatttc
1261ttgtgctgca gcatgcggaa ggtggcaaac tgtggtcata tatcagtaaa tttctaaaca
1321gaagtcctga agaaagcttt gacatcaagg aagtgaaaaa acctacactt gcaaaagttc
1381acctgcagca gccaacttct agtcctcagg acagcagtag ctttgaatcc agaggaagtg
1441atggtggaag catgcttaaa gctctgcctt tgaagagtag tcttactcca agttctcaag
1501atgacagcaa ccaggaagat gatggccaag atagctctcc aaagtggcca gattctggtt
1561caagttcaga agaagaatgt actactagtt atttaacatt atgcaatgaa tatgggcaag
1621aaaagattga accagggtct ttgaatgagg agcccttcat gaagactgaa gggaatggtg
1681ttgatacaaa agctattaaa agcttcccag cacaccttgc tgctgacagt gacagcccca
1741gcacacagct gagagctcac gagctgaagt tcttccccaa cgatgaccca gaagcagtta
1801gttctccaag aacatcagat tccctcagta gatcaaaaaa tagccccatg gaattcttta
1861ggatagacag taaggatagc gcaagtgaac tcctgggact tgactttgga gaaaaattgt
1921atagtctaaa atcagaacct ttgaaaccat tctttactct tccagatgga gacagtgctt
1981ctaggagttt taatactagt gaaagcaagg tagagtttaa agctcaggac accattagca
2041ggggctcaga tgactcagtg ccagttattt catttaaaga tgctgctttt gatgatgtca
2101gtggtactga tgaaggaaga cctgatcttc ttgtaaattt acctggtgaa ttggagtcaa
2161caagagaagc tgcagcaatg ggacctacta agtttacaca aactaatata gggataatag
2221aaaataaact cttggaagcc cctgatgttt tatgcctcag gcttagtact gaacaatgcc
2281aagcacatga ggagaaaggc atagaggaac tgagtgatcc ctctgggccc aaatcctata
2341gtataacaga gaaacactat gcacaggagg atcccaggat gttatttgta gcagctgttg
2401atcatagtag ttcaggagat atgtctttgt tacccagctc aagatcttag ttttcaagga
2461ctnggagtgg ttgagtcagc agtaactgca aacaacacag aagaaaagct attccgtatt
2521gtagtccact ctcaggtgct aatgaatata tgcaaagcac agacacttta aaaacagaag
2581aagtatgctg ttnnacagat cagactgatg atttggctaa agaggaacca acttctttat
2641tccagagaga ctctgagact aagggtgaaa gtggtttagt gctagaagga gacaaggaaa
2701tacatcagat ttttgaggac cttgataaaa aattagcact agcctccagg ttttacatcc
2761cagagggctg cattcaaaga tgggcagctg aaatggtggt agcccttgat gctttacata
2821gagagggaat tgtgtgccgc gatttgaacc caaacaacat cttattgaat gatagaggac
2881acattcagct aacgtatttt agcaggtgga gtgaggttga agattcctgt gacagcgatg
2941ccatagagag aatgtactgt gccccagagg ttggagcaat cactgaagaa actgaagcct
3001gtgattggtg gagtttgggt gctgtcctct ttgaacttct cactggcaag actctggttg
3061aatgccatcc agcaggaata aatactcaca ctactttgaa catgccagaa tgtgtctctg
3121aagaggctcg ctcactcatt caacagctct tgcagttcaa tcctctggaa cgacttggtg
3181ctggagttgc tggtgttgaa gatatcaaat ctcatccatt ttttacccct gtggattggg
3241cagaactgat gagattgcca actttcttgt acaaagtggt tggtaagcct atccctaacc
3301ctctcctcgg tctcgattct acgtagtaat gagctagcgc taaccggtgg cgcgttaagt
3361cgacaatcaa cctctggatt a

Download FASTA (ORF) (Full)

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