Construct: ORF ccsbBroad304_15306
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF018981.1_s304c1, BRDN0000459464
- Derived from:
- ccsbBroadEn_15306
- DNA Barcode:
- None
- Epitope Tag:
- V5 (not translated due to frame shift)
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- NRBP2 (340371)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_15306
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 340371 | NRBP2 | nuclear receptor binding pr... | NM_178564.4 | 50.8% | 46.4% | (many diffs) |
| 2 | human | 340371 | NRBP2 | nuclear receptor binding pr... | XM_017013382.1 | 44.3% | 40.4% | (many diffs) |
| 3 | human | 340371 | NRBP2 | nuclear receptor binding pr... | XM_017013381.2 | 42.9% | 36.8% | (many diffs) |
| 4 | human | 340371 | NRBP2 | nuclear receptor binding pr... | XM_017013380.1 | 42% | 38.2% | (many diffs) |
| 5 | human | 340371 | NRBP2 | nuclear receptor binding pr... | XM_017013383.1 | 41% | 39.6% | (many diffs) |
| 6 | human | 340371 | NRBP2 | nuclear receptor binding pr... | XR_001745528.1 | 39.3% | (many diffs) | |
| 7 | human | 340371 | NRBP2 | nuclear receptor binding pr... | XM_017013378.1 | 38.5% | 35% | (many diffs) |
| 8 | human | 340371 | NRBP2 | nuclear receptor binding pr... | XR_001745529.1 | 38% | (many diffs) | |
| 9 | human | 340371 | NRBP2 | nuclear receptor binding pr... | XM_017013379.1 | 37.4% | 36.1% | (many diffs) |
| 10 | mouse | 223649 | Nrbp2 | nuclear receptor binding pr... | NM_144847.1 | 85.9% | 83.5% | (many diffs) |
| 11 | mouse | 223649 | Nrbp2 | nuclear receptor binding pr... | XM_006520772.3 | 44.4% | 43.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 846
- ORF length:
- 777
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcaccat gtgtgcgctg gagatggctg tactggaaat ccagaccaat ggggacaccn 121 gggtcacaga ggagnccatt nntcgcgcca ggcactcgnt nagtgacccc aacatgcggg 181 agttcntcct ttgctgcctg gcccgggacc ctgcccgccg gccctctgcc cacagcctcc 241 tcttccaccg cgtgctcttc gaggtgcact cgctgaagct cctggcagcc cactgcttca 301 tccagcacca gtacctcatg cctgagaatg tggtggagga gaagaccaag gccatggacc 361 tgcacgcggt cttggcggag cttccccggc cccgcaggcc cccgctgcag tggcggtact 421 cggaagtctc cttcatggag ctggacaaat tcctggagga tgtcaggaat ggaatctacc 481 cactgatgaa ctttgcagcc actcgacccc tggggctgcc ccgtgtgctg gccccacccc 541 cggaggaggt ccaaaaggcc aagaccccga cgccagagcc ctttgactct gagaccagaa 601 aggtcatcca gatgcagtgc aacctggaga gaagcgagga caaggcgcgc tggcatctca 661 ctctgcttct ggtgctggaa gaccggctgc accggcagct gacctacgac ctgctcccna 721 cggacagcgc ccaggacctc gcctcggagc tcgtgcacta tggcttcctc cacgaggacn 781 accggatgaa gctggcccgc cttcctggag agcaccttcc tcaagtaccg tgggacccag 841 gccttgccaa ctttcttgta caaagtggtt ggtaagccta tccctaaccc tctcctcggt 901 ctcgattcta cgtagtaatg agctagcgct aaccggtggc gcgttaagtc gacaatcaac 961 ctctggatta