Construct: ORF ccsbBroad304_15313
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008142.1_s304c1, BRDN0000405351
- Derived from:
- ccsbBroadEn_15313
- DNA Barcode:
- None
- Epitope Tag:
- V5 (not translated due to prior stop codon)
- Notes:
- Early stop codon detected
Originally Annotated References:
- Gene:
- GOLGA6L5P (374650)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_15313
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 101927601 | GOLGA6L19 | golgin A6 family like 19 | XM_006725184.3 | 78.9% | 12% | (many diffs) |
| 2 | human | 647042 | GOLGA6L10 | golgin A6 family like 10 | NM_001322400.1 | 76.6% | 12.3% | (many diffs) |
| 3 | human | 100133220 | GOLGA6L3 | golgin A6 family like 3 | NM_001310153.2 | 75.6% | 12.6% | (many diffs) |
| 4 | human | 647042 | GOLGA6L10 | golgin A6 family like 10 | NM_001164465.3 | 74.2% | 12.6% | (many diffs) |
| 5 | human | 440295 | GOLGA6L9 | golgin A6 family like 9 | NM_198181.3 | 73.4% | 15.7% | (many diffs) |
| 6 | human | 643707 | GOLGA6L4 | golgin A6 family like 4 | XM_017022481.1 | 72.4% | 12.6% | (many diffs) |
| 7 | human | 643707 | GOLGA6L4 | golgin A6 family like 4 | XM_017022482.1 | 72.4% | 12.6% | (many diffs) |
| 8 | human | 440295 | GOLGA6L9 | golgin A6 family like 9 | XM_011521601.2 | 69.8% | 16.5% | (many diffs) |
| 9 | human | 643707 | GOLGA6L4 | golgin A6 family like 4 | NM_001267536.3 | 67.5% | 11.4% | (many diffs) |
| 10 | human | 642402 | GOLGA6L17P | golgin A6 family like 17, p... | NR_111962.1 | 64.5% | (many diffs) | |
| 11 | human | 440295 | GOLGA6L9 | golgin A6 family like 9 | XM_017022226.1 | 41.7% | 30.6% | (many diffs) |
| 12 | human | 374650 | GOLGA6L5P | golgin A6 family like 5, ps... | NR_003246.4 | 23.9% | (many diffs) | |
| 13 | human | 102724117 | LOC102724117 | golgin subfamily A member 6... | XR_429586.2 | 23.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 273
- ORF length:
- 204
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcaccat gtggccccaa ccccgcctcc ctccccaccc cgcgatgtca gaaaaaacac 121 aacaggggaa attggccgca gccaagaaaa agttaaaagc atattggcag aggaagagcc 181 ctggcattcc agcaggagct aacaggaaaa agaaaatcaa tggcagtagc cctgacacat 241 tcacttctgg tggttaccac tcacctgggg attgagcaac aggtatctac ggggagggcc 301 gtgcatcctc tactaccctg gaggatcctc agagccagta ccaagaacta gcagtagccc 361 tggattcaag ctccgcaata atcagtcaac tcactgaaaa catcaattca ctggttcgca 421 catctaagga ggagaagaag catgagatac atctggtaca gaagcttggg aggagcttgt 481 tcaaactcaa aaaccagacg gctgaacccc tggccccaca gcccccagca gggccatcta 541 agatggagca gctacaagat gagaccaacc acctaaggaa ggagctagag agtgtgggaa 601 gacagctcca ggctgaggtg gaaaacaatc agatgttgag tctcctgaac aggagacagg 661 aggagaggct acgtgaacag gaggagaggc tacgtgaaca ggaggagagg ctacgtgaac 721 aggaggagag gctacgtgaa caggaggaga ggctgtgtga acaggaggag aggctgtgtg 781 aacaggagga gaggctacgt gaacaggagg agaggctgtg tgaacaggag gagaggctac 841 gtgaacatga ggagaggctg tgtgaacagg aggagaggct gtgtgaacag gaggagaggc 901 tacgtgaaca ggaggagagg ctgtgtgaac aggagnagag gctgtgtgaa caggaggaga 961 ggctgngtga acaggaggag aggctacgtg aacaggagga gaggctgtgt gaacaggagg 1021 agaggctacg tgaacaggag gagaggctgt gtgaacagga ggagaggcta cgtgaacagg 1081 aggagaggct gtgtgaacag gaggagaggc tacgtgaaca ggaggagagg ctgtgtgaac 1141 aggagaagct gccagggcag gagaggctgc tggaagaggt ggagaagctg ttagaacagg 1201 agaggcggca ggaggagcag gagaggcttc gggagaggga gaggctgctg gaagaggtgg 1261 agaagctgtt agaacaggag aggcggcagg aggagcagga gaggctgctg gagagggaga 1321 ggctgctgga agaggtggag aagctgttag aacaggagag gcggcaggag gagcaggaga 1381 ggctgctgga gagggagagg ctgctggacg aggtggagga gctcctggac gaggtggagg 1441 aggagcagga gaggcttcgg ttgccaactt tcttgtacaa agtggttggt aagcctatcc 1501 ctaaccctct cctcggtctc gattctacgt agtaatgagc tagcgctaac cggtggcgcg 1561 ttaagtcgac aatcaacctc tggatta