Construct: ORF ccsbBroad304_15427
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF015362.1_s304c1, BRDN0000402016
- Derived from:
- ccsbBroadEn_15427
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- GGT1 (2678)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_15427
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 728226 | GGTLC3 | gamma-glutamyltransferase l... | NM_001355479.1 | 97.3% | 93.3% | (many diffs) |
| 2 | human | 728441 | GGT2 | gamma-glutamyltransferase 2 | XM_011530621.2 | 97.3% | 92.8% | (many diffs) |
| 3 | human | 728441 | GGT2 | gamma-glutamyltransferase 2 | XM_017029185.1 | 97.3% | 92.8% | (many diffs) |
| 4 | human | 92086 | GGTLC1 | gamma-glutamyltransferase l... | NM_178311.3 | 97.1% | 96% | (many diffs) |
| 5 | human | 92086 | GGTLC1 | gamma-glutamyltransferase l... | NM_178312.3 | 97.1% | 96% | (many diffs) |
| 6 | human | 92086 | GGTLC1 | gamma-glutamyltransferase l... | XM_005260865.4 | 97.1% | 96% | (many diffs) |
| 7 | human | 92086 | GGTLC1 | gamma-glutamyltransferase l... | XM_017028126.2 | 97.1% | 96% | (many diffs) |
| 8 | human | 91227 | GGTLC2 | gamma-glutamyltransferase l... | NM_199127.2 | 93.5% | 90.2% | (many diffs) |
| 9 | human | 91227 | GGTLC2 | gamma-glutamyltransferase l... | XM_024452301.1 | 93.5% | 90.2% | (many diffs) |
| 10 | human | 91227 | GGTLC2 | gamma-glutamyltransferase l... | NM_001282879.1 | 87.9% | 87.6% | (many diffs) |
| 11 | human | 91227 | GGTLC2 | gamma-glutamyltransferase l... | XM_005261817.3 | 87.9% | 87.6% | (many diffs) |
| 12 | human | 91227 | GGTLC2 | gamma-glutamyltransferase l... | XM_011530497.1 | 87.9% | 87.6% | (many diffs) |
| 13 | human | 728226 | GGTLC3 | gamma-glutamyltransferase l... | XM_024452264.1 | 86.9% | 83.3% | (many diffs) |
| 14 | human | 728441 | GGT2 | gamma-glutamyltransferase 2 | XM_006724396.2 | 86.9% | 82.9% | (many diffs) |
| 15 | human | 102724197 | LOC102724197 | inactive glutathione hydrol... | XM_006724929.2 | 86.9% | 82.9% | (many diffs) |
| 16 | human | 728441 | GGT2 | gamma-glutamyltransferase 2 | XM_017029184.1 | 86.9% | 82.9% | (many diffs) |
| 17 | human | 92086 | GGTLC1 | gamma-glutamyltransferase l... | XM_005260863.4 | 86.7% | 85.7% | (many diffs) |
| 18 | human | 92086 | GGTLC1 | gamma-glutamyltransferase l... | XM_005260864.4 | 86.7% | 85.7% | (many diffs) |
| 19 | human | 92086 | GGTLC1 | gamma-glutamyltransferase l... | XM_011529391.3 | 86.7% | 85.7% | (many diffs) |
| 20 | human | 91227 | GGTLC2 | gamma-glutamyltransferase l... | XM_005261818.2 | 84.8% | 81.8% | (many diffs) |
| 21 | human | 92086 | GGTLC1 | gamma-glutamyltransferase l... | XM_011529392.2 | 84% | 83.1% | (many diffs) |
| 22 | human | 92086 | GGTLC1 | gamma-glutamyltransferase l... | XM_011529393.2 | 84% | 83.1% | (many diffs) |
| 23 | human | 91227 | GGTLC2 | gamma-glutamyltransferase l... | XM_005261815.3 | 80.6% | 80.3% | (many diffs) |
| 24 | human | 728441 | GGT2 | gamma-glutamyltransferase 2 | XM_005261890.4 | 68.2% | 65.1% | (many diffs) |
| 25 | human | 102724197 | LOC102724197 | inactive glutathione hydrol... | XM_006724928.3 | 68.2% | 65.1% | (many diffs) |
| 26 | human | 728441 | GGT2 | gamma-glutamyltransferase 2 | XM_017029183.1 | 68.2% | 65.1% | (many diffs) |
| 27 | human | 102724197 | LOC102724197 | inactive glutathione hydrol... | XM_017030145.2 | 59% | 56.3% | (many diffs) |
| 28 | human | 728441 | GGT2 | gamma-glutamyltransferase 2 | XM_006724395.4 | 54.3% | 51.8% | (many diffs) |
| 29 | human | 728441 | GGT2 | gamma-glutamyltransferase 2 | XM_017029182.2 | 53.1% | 50.7% | (many diffs) |
| 30 | human | 728441 | GGT2 | gamma-glutamyltransferase 2 | XM_006724392.3 | 49.9% | 47.6% | (many diffs) |
| 31 | human | 102724197 | LOC102724197 | inactive glutathione hydrol... | XM_006724924.4 | 49.9% | 47.6% | (many diffs) |
| 32 | human | 728441 | GGT2 | gamma-glutamyltransferase 2 | XM_017029179.2 | 49.9% | 47.6% | (many diffs) |
| 33 | human | 728441 | GGT2 | gamma-glutamyltransferase 2 | XM_017029180.1 | 49.9% | 47.6% | (many diffs) |
| 34 | human | 728441 | GGT2 | gamma-glutamyltransferase 2 | XM_017029181.2 | 49.9% | 47.6% | (many diffs) |
| 35 | human | 102724197 | LOC102724197 | inactive glutathione hydrol... | XM_017030144.1 | 49.9% | 47.6% | (many diffs) |
| 36 | human | 102724197 | LOC102724197 | inactive glutathione hydrol... | XM_017030143.2 | 44.7% | 42.6% | (many diffs) |
| 37 | human | 102724197 | LOC102724197 | inactive glutathione hydrol... | XM_006724921.4 | 42.3% | 40.4% | (many diffs) |
| 38 | human | 102724197 | LOC102724197 | inactive glutathione hydrol... | XM_017030136.2 | 42.3% | 40.4% | (many diffs) |
| 39 | human | 102724197 | LOC102724197 | inactive glutathione hydrol... | XM_017030137.2 | 42.3% | 40.4% | (many diffs) |
| 40 | human | 102724197 | LOC102724197 | inactive glutathione hydrol... | XM_017030140.2 | 42.3% | 40.4% | (many diffs) |
| 41 | human | 102724197 | LOC102724197 | inactive glutathione hydrol... | XM_017030141.2 | 42.3% | 40.4% | (many diffs) |
| 42 | human | 102724197 | LOC102724197 | inactive glutathione hydrol... | XM_017030142.2 | 42.3% | 40.4% | (many diffs) |
| 43 | human | 2678 | GGT1 | gamma-glutamyltransferase 1 | NM_001288833.2 | 39.5% | 39.5% | 1_1032del |
| 44 | human | 2678 | GGT1 | gamma-glutamyltransferase 1 | NM_013421.3 | 39.5% | 39.5% | 1_1032del |
| 45 | human | 2678 | GGT1 | gamma-glutamyltransferase 1 | NM_013430.2 | 39.5% | 39.5% | 1_1032del |
| 46 | human | 102724197 | LOC102724197 | inactive glutathione hydrol... | XM_011546256.3 | 38.5% | 36.7% | (many diffs) |
| 47 | human | 728441 | GGT2 | gamma-glutamyltransferase 2 | NM_001351304.1 | 38.1% | 36.4% | (many diffs) |
| 48 | human | 728441 | GGT2 | gamma-glutamyltransferase 2 | XM_017029186.2 | 38.1% | 36.4% | (many diffs) |
| 49 | human | 2679 | GGT3P | gamma-glutamyltransferase 3... | NR_003267.1 | 32.3% | (many diffs) | |
| 50 | human | 102724823 | LOC102724823 | inactive glutathione hydrol... | XR_002958856.1 | 17.8% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 744
- ORF length:
- 675
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcaccat gacctccgag ttcttcgctg cccagctccg ggcccagatc tctgacgaca 121 ccactcaccc gatctcctac tacaagcccg agttctacac gccggatgac gggggcactg 181 ctcacctgtc tgtcgtcgca gaggacggca gtgctgtgtc cgccaccagc accatcaacc 241 tctactttgg ctccaaggtc cgctccccgg tcagcgggat cctgttcaat aatgaaatgg 301 acgacttcag ctctcccagc atcaccaacg agtttggggt acccccctca cctgccaatt 361 tcatccagcc agggaagcag ccgctctcgt ccatgtgccc gacgatcatg gtgggccagg 421 acggccaggt ccggatggtg gtgggagctg ctgggggcac acagatcacc acggccactg 481 cactggccat catctacaac ctctggttcg gctatgacgt gaagcgggcc gtggaggagc 541 cccggctgca caaccagctt ctgcccaacg tcacgacagt ggagagaaac attgaccagg 601 cagtgactgc agccctggag acccggcacc atcacaccca gatcgcgtcc accttcatcg 661 ctgtggtgca agccatcgtc cgcacggctg gtggctgggc agctgcctcg gactccagga 721 aaggcgggga gcctgccggc tacttgccaa ctttcttgta caaagtggtt ggtaagccta 781 tccctaaccc tctcctcggt ctcgattcta cgtagtaatg agctagcgct aaccggtggc 841 gcgttaagtc gacaatcaac ctctggatta