Construct: ORF ccsbBroad304_15448

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF013831.1_s304c1, BRDN0000402506
Derived from:
ccsbBroadEn_15448
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
HNMT (3176)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_15448
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 3176 HNMT histamine N-methyltransferase NM_001024074.3 100% 100%
2 human 3176 HNMT histamine N-methyltransferase NM_001024075.2 38.2% 36.5% (many diffs)
3 human 3176 HNMT histamine N-methyltransferase XM_017003949.2 29.9% 28.5% (many diffs)
4 human 3176 HNMT histamine N-methyltransferase NM_006895.3 16.5% 15.7% (many diffs)
5 human 3176 HNMT histamine N-methyltransferase XR_002959286.1 4.3% 1_97del;251_3490del
6 mouse 140483 Hnmt histamine N-methyltransferase NM_080462.2 15.1% 13.8% (many diffs)
7 mouse 140483 Hnmt histamine N-methyltransferase XM_006497671.3 15.1% 13.8% (many diffs)
8 mouse 140483 Hnmt histamine N-methyltransferase XM_006497670.3 14.5% 13.3% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
219
ORF length:
153
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatggc atcttccatg aggagcttgt tttctgacca cgggaaatat gttgaatctt
121tccggaggtt tctcaaccat tccacggaac accagtgcat gcaggaattc atggacaaga
181agctgccagg cataatagga agataccaga attgctgttn nccaactttc ttgtacaaag
241tggttggtaa gcctatccct aaccctctcc tcggtctcga ttctacgtag taatgagcta
301gcgctaaccg gtggcgcgtt aagtcgacaa tcaacctctg gatta

Download FASTA (ORF) (Full)