Construct: ORF ccsbBroad304_15607

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF014772.1_s304c1, BRDN0000408821
Derived from:
ccsbBroadEn_15607
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TCF4 (6925)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_15607
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 6925 TCF4 transcription factor 4 NM_001369571.1 99.9% 100% 1929A>G
2 human 6925 TCF4 transcription factor 4 NM_001369572.1 99.9% 100% 1929A>G
3 human 6925 TCF4 transcription factor 4 NM_003199.3 99.9% 100% 1929A>G
4 human 6925 TCF4 transcription factor 4 NM_001369573.1 99.8% 99.8% 366_367insCAG;1926A>G
5 human 6925 TCF4 transcription factor 4 NM_001369574.1 99.8% 99.8% 1066_1067insCAG;1926A>G
6 human 6925 TCF4 transcription factor 4 NM_001083962.2 99.3% 99.4% 1634_1645del;1941A>G
7 human 6925 TCF4 transcription factor 4 NM_001369567.1 99.3% 99.4% 1634_1645del;1941A>G
8 human 6925 TCF4 transcription factor 4 NM_001369568.1 99.3% 99.4% 1634_1645del;1941A>G
9 human 6925 TCF4 transcription factor 4 NM_001330604.3 99.2% 99.2% 1066_1067insCAG;1631_1642del;1938A>G
10 human 6925 TCF4 transcription factor 4 NM_001369569.1 99.2% 99.2% 366_367insCAG;1631_1642del;1938A>G
11 human 6925 TCF4 transcription factor 4 NM_001369570.1 99.2% 99.2% 366_367insCAG;1631_1642del;1938A>G
12 human 6925 TCF4 transcription factor 4 NM_001243228.2 98.4% 98.5% 550_567del;1652_1663del;1959A>G
13 human 6925 TCF4 transcription factor 4 NM_001243230.1 96.9% 96.8% (many diffs)
14 human 6925 TCF4 transcription factor 4 NM_001306207.1 96.3% 96.4% 0_1ins72;1857A>G
15 human 6925 TCF4 transcription factor 4 NM_001348219.2 96.3% 96.4% 0_1ins72;1857A>G
16 human 6925 TCF4 transcription factor 4 NM_001369582.1 96.3% 96.4% 0_1ins72;1857A>G
17 human 6925 TCF4 transcription factor 4 NM_001369583.1 96.3% 96.4% 0_1ins72;1857A>G
18 human 6925 TCF4 transcription factor 4 NM_001348220.1 96.2% 96.2% 0_1ins72;294_295insCAG;1854A>G
19 human 6925 TCF4 transcription factor 4 NM_001369584.1 96.2% 96.2% 0_1ins72;294_295insCAG;1854A>G
20 human 6925 TCF4 transcription factor 4 NM_001369585.1 96.2% 96.2% 0_1ins72;294_295insCAG;1854A>G
21 human 6925 TCF4 transcription factor 4 XM_017025950.2 96% 96.1% (many diffs)
22 human 6925 TCF4 transcription factor 4 NM_001243227.2 95.7% 95.8% 0_1ins72;1562_1573del;1869A>G
23 human 6925 TCF4 transcription factor 4 NM_001348217.1 95.7% 95.8% 0_1ins72;1562_1573del;1869A>G
24 human 6925 TCF4 transcription factor 4 NM_001348218.2 95.7% 95.8% 0_1ins72;1562_1573del;1869A>G
25 human 6925 TCF4 transcription factor 4 NM_001369575.1 95.7% 95.8% 0_1ins72;1562_1573del;1869A>G
26 human 6925 TCF4 transcription factor 4 NM_001369586.1 95.6% 95.5% (many diffs)
27 human 6925 TCF4 transcription factor 4 NM_001369576.1 95.6% 95.6% (many diffs)
28 human 6925 TCF4 transcription factor 4 NM_001369577.1 95.6% 95.6% (many diffs)
29 human 6925 TCF4 transcription factor 4 NM_001369578.1 95.6% 95.6% (many diffs)
30 human 6925 TCF4 transcription factor 4 NM_001369579.1 95.6% 95.6% (many diffs)
31 human 6925 TCF4 transcription factor 4 NM_001369580.1 95.6% 95.6% (many diffs)
32 human 6925 TCF4 transcription factor 4 NM_001369581.1 95.6% 95.6% (many diffs)
33 human 6925 TCF4 transcription factor 4 XM_006722538.3 95.6% 95.6% (many diffs)
34 human 6925 TCF4 transcription factor 4 NM_001243231.2 93.4% 92.6% (many diffs)
35 human 6925 TCF4 transcription factor 4 NM_001348211.2 92.8% 92.1% (many diffs)
36 human 6925 TCF4 transcription factor 4 XM_017025951.2 92.7% 91.9% (many diffs)
37 human 6925 TCF4 transcription factor 4 XM_024451241.1 87.5% 87.6% 0_1ins237;1397_1408del;1704A>G
38 human 6925 TCF4 transcription factor 4 XM_017025953.2 86.6% 82.8% (many diffs)
39 human 6925 TCF4 transcription factor 4 NM_001306208.1 86.5% 82.7% (many diffs)
40 human 6925 TCF4 transcription factor 4 NM_001243226.3 86.2% 86.2% 1_306del;1940_1951del;2247A>G
41 human 6925 TCF4 transcription factor 4 XM_005266749.4 86.1% 82.4% (many diffs)
42 human 6925 TCF4 transcription factor 4 NM_001243232.1 86% 82.2% (many diffs)
43 human 6925 TCF4 transcription factor 4 XM_017025952.2 85.8% 82.1% (many diffs)
44 human 6925 TCF4 transcription factor 4 NM_001243233.2 80.4% 80.5% 0_1ins390;1539A>G
45 human 6925 TCF4 transcription factor 4 NM_001348212.2 80.4% 80.5% 0_1ins390;1539A>G
46 human 6925 TCF4 transcription factor 4 XM_017025956.2 80.4% 80.5% 0_1ins390;1539A>G
47 human 6925 TCF4 transcription factor 4 NM_001330605.3 79.9% 80% 0_1ins390;1244_1255del;1551A>G
48 human 6925 TCF4 transcription factor 4 NM_001348213.2 79.9% 80% 0_1ins390;1244_1255del;1551A>G
49 human 6925 TCF4 transcription factor 4 XM_005266752.5 79.9% 80% 0_1ins390;1244_1255del;1551A>G
50 human 6925 TCF4 transcription factor 4 XM_005266755.5 79.9% 80% 0_1ins390;1244_1255del;1551A>G
51 human 6925 TCF4 transcription factor 4 XM_017025954.2 79.8% 79.8% (many diffs)
52 human 6925 TCF4 transcription factor 4 NM_001243236.2 75% 72.4% (many diffs)
53 human 6925 TCF4 transcription factor 4 NM_001348216.2 74.6% 71.9% (many diffs)
54 human 6925 TCF4 transcription factor 4 NM_001243235.2 74.3% 71.7% (many diffs)
55 human 6925 TCF4 transcription factor 4 NM_001348214.2 74.1% 71.6% (many diffs)
56 human 6925 TCF4 transcription factor 4 NM_001243234.2 73.8% 71.3% (many diffs)
57 human 6925 TCF4 transcription factor 4 XM_005266761.4 73.7% 71.2% (many diffs)
58 human 6925 TCF4 transcription factor 4 NM_001348215.2 67.1% 67.2% 0_1ins648;986_997del;1293A>G
59 mouse 21413 Tcf4 transcription factor 4 NM_001083967.1 92.4% 98% (many diffs)
60 mouse 21413 Tcf4 transcription factor 4 XM_006525750.3 92.4% 98% (many diffs)
61 mouse 21413 Tcf4 transcription factor 4 XM_017317857.1 92.4% 98% (many diffs)
62 mouse 21413 Tcf4 transcription factor 4 XM_006525751.3 92.3% 97.9% (many diffs)
63 mouse 21413 Tcf4 transcription factor 4 XM_006525752.3 92.3% 97.9% (many diffs)
64 mouse 21413 Tcf4 transcription factor 4 XM_017317858.1 92.1% 97.7% (many diffs)
65 mouse 21413 Tcf4 transcription factor 4 NM_013685.2 91.9% 97.4% (many diffs)
66 mouse 21413 Tcf4 transcription factor 4 XM_006525746.3 91.9% 97.4% (many diffs)
67 mouse 21413 Tcf4 transcription factor 4 XM_006525747.3 91.9% 97.4% (many diffs)
68 mouse 21413 Tcf4 transcription factor 4 XM_006525748.3 91.7% 97.3% (many diffs)
69 mouse 21413 Tcf4 transcription factor 4 XM_006525749.3 91.7% 97.3% (many diffs)
70 mouse 21413 Tcf4 transcription factor 4 XM_017317854.1 91.7% 97.3% (many diffs)
71 mouse 21413 Tcf4 transcription factor 4 XM_017317855.1 91.7% 97.3% (many diffs)
72 mouse 21413 Tcf4 transcription factor 4 XM_017317856.1 91.6% 97.1% (many diffs)
73 mouse 21413 Tcf4 transcription factor 4 XM_006525753.3 88.3% 93.8% (many diffs)
74 mouse 21413 Tcf4 transcription factor 4 XM_017317859.1 88.1% 93.7% (many diffs)
75 mouse 21413 Tcf4 transcription factor 4 XM_017317861.1 73.7% 79% (many diffs)
76 mouse 21413 Tcf4 transcription factor 4 XM_006525757.3 73.3% 78.5% (many diffs)
77 mouse 21413 Tcf4 transcription factor 4 XM_006525759.3 73.3% 78.5% (many diffs)
78 mouse 21413 Tcf4 transcription factor 4 XM_017317860.1 73.3% 78.5% (many diffs)
79 mouse 21413 Tcf4 transcription factor 4 XM_017317863.1 73.3% 78.5% (many diffs)
80 mouse 21413 Tcf4 transcription factor 4 XM_006525762.3 68.8% 70.4% (many diffs)
81 mouse 21413 Tcf4 transcription factor 4 XM_006525760.3 68.4% 70% (many diffs)
82 mouse 21413 Tcf4 transcription factor 4 XM_006525766.3 68.3% 69.8% (many diffs)
83 mouse 21413 Tcf4 transcription factor 4 XM_006525763.3 68.2% 71% (many diffs)
84 mouse 21413 Tcf4 transcription factor 4 XM_006525761.3 67.8% 70.6% (many diffs)
85 mouse 21413 Tcf4 transcription factor 4 XM_017317862.1 61.6% 66.4% (many diffs)
86 mouse 21413 Tcf4 transcription factor 4 XM_006525764.3 61.2% 66% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
2070
ORF length:
2001
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcaccat gcatcaccaa cagcgaatgg ctgccttagg gacggacaaa gagctgagtg
121atttactgga tttcagtgcg atgttttcac ctcctgtgag cagtgggaaa aatggaccaa
181cttctttggc aagtggacat tttactggct caaatgtaga agacagaagt agctcagggt
241cctgggggaa tggaggacat ccaagcccgt ccaggaacta tggagatggg actccctatg
301accacatgac cagcagggac cttgggtcac atgacaatct ctctccacct tttgtcaatt
361ccagaataca aagtaaaaca gaaaggggct catactcatc ttatgggaga gaatcaaact
421tacagggttg ccaccagcag agtctccttg gaggtgacat ggatatgggc aacccaggaa
481ccctttcgcc caccaaacct ggttcccagt actatcagta ttctagcaat aatccccgaa
541ggaggcctct tcacagtagt gccatggagg tacagacaaa gaaagttcga aaagttcctc
601caggtttgcc atcttcagtc tatgctccat cagcaagcac tgccgactac aatagggact
661cgccaggcta tccttcctcc aaaccagcaa ccagcacttt ccctagctcc ttcttcatgc
721aagatggcca tcacagcagt gacccttgga gctcctccag tgggatgaat cagcctggct
781atgcaggaat gttgggcaac tcttctcata ttccacagtc cagcagctac tgtagcctgc
841atccacatga acgtttgagc tatccatcac actcctcagc agacatcaat tccagtcttc
901ctccgatgtc cactttccat cgtagtggta caaaccatta cagcacctct tcctgtacgc
961ctcctgccaa cgggacagac agtataatgg caaatagagg aagcggggca gccggcagct
1021cccagactgg agatgctctg gggaaagcac ttgcttcgat ctattctcca gatcacacta
1081acaacagctt ttcatcaaac ccttcaactc ctgttggctc tcctccatct ctctcagcag
1141gcacagctgt ttggtctaga aatggaggac aggcctcatc gtctcctaat tatgaaggac
1201ccttacactc tttgcaaagc cgaattgaag atcgtttaga aagactggat gatgctattc
1261atgttctccg gaaccatgca gtgggcccat ccacagctat gcctggtggt catggggaca
1321tgcatggaat cattggacct tctcataatg gagccatggg tggtctgggc tcagggtatg
1381gaaccggcct tctttcagcc aacagacatt cactcatggt ggggacccat cgtgaagatg
1441gcgtggccct gagaggcagc cattctcttc tgccaaacca ggttccggtt ccacagcttc
1501ctgtccagtc tgcgacttcc cctgacctga acccacccca ggacccttac agaggcatgc
1561caccaggact acaggggcag agtgtctcct ctggcagctc tgagatcaaa tccgatgacg
1621agggtgatga gaacctgcaa gacacgaaat cttcggagga caagaaatta gatgacgaca
1681agaaggatat caaatcaatt actagcaata atgacgatga ggacctgaca ccagagcaga
1741aggcagagcg tgagaaggag cggaggatgg ccaacaatgc ccgagagcgt ctgcgggtcc
1801gtgacatcaa cgaggctttc aaagagctcg gccgcatggt gcagctccac ctcaagagtg
1861acaagcccca gaccaagctc ctgatcctcc accaggcggt ggccgtcatc ctcagtctgg
1921agcagcaagt ccgagaaagg aatctgaatc cgaaagctgc gtgtctgaaa agaagggagg
1981aagagaaggt gtcctcggag cctccccctc tctccttggc cggcccacac cctggaatgg
2041gagacgcatc gaatcacatg ggacagatgt nnccaacttt cttgtacaaa gtggttggta
2101agcctatccc taaccctctc ctcggtctcg attctacgta gtaatgagct agcgctaacc
2161ggtggcgcgt taagtcgaca atcaacctct ggatta

Download FASTA (ORF) (Full)