Construct: ORF ccsbBroad304_15794
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF011753.1_s304c1, BRDN0000404532
- Derived from:
- ccsbBroadEn_15794
- DNA Barcode:
- None
- Epitope Tag:
- V5
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ZNF544 (27300)
Vector Information:
- Vector Backbone:
- pLX_304
- Pol II Cassette 1:
- PGK-BlastR
- Pol II Cassette 2:
- CMV-ccsbBroad304_15794
- Selection Marker:
- BlastR
- Visible Reporter:
- n/a
- Epitope Tag:
- V5
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 27300 | ZNF544 | zinc finger protein 544 | NM_001320782.1 | 84.7% | 72.8% | (many diffs) |
| 2 | human | 27300 | ZNF544 | zinc finger protein 544 | NM_001320780.2 | 75% | 65.9% | (many diffs) |
| 3 | human | 27300 | ZNF544 | zinc finger protein 544 | NM_001320783.2 | 73.6% | 46.4% | (many diffs) |
| 4 | human | 27300 | ZNF544 | zinc finger protein 544 | NM_001320785.2 | 70.7% | 47.5% | (many diffs) |
| 5 | human | 27300 | ZNF544 | zinc finger protein 544 | NM_001320786.2 | 70.7% | 47.5% | (many diffs) |
| 6 | human | 27300 | ZNF544 | zinc finger protein 544 | NM_001320787.2 | 70.7% | 47.5% | (many diffs) |
| 7 | human | 27300 | ZNF544 | zinc finger protein 544 | NM_001320788.1 | 66.2% | 50.4% | (many diffs) |
| 8 | human | 27300 | ZNF544 | zinc finger protein 544 | NM_001320789.1 | 66.2% | 50.4% | (many diffs) |
| 9 | human | 27300 | ZNF544 | zinc finger protein 544 | NM_001320791.1 | 66.2% | 50.4% | (many diffs) |
| 10 | human | 27300 | ZNF544 | zinc finger protein 544 | NM_001320792.1 | 66.2% | 50.4% | (many diffs) |
| 11 | human | 27300 | ZNF544 | zinc finger protein 544 | XM_017026599.1 | 53.1% | 47% | (many diffs) |
| 12 | human | 27300 | ZNF544 | zinc finger protein 544 | NM_001320776.2 | 49.9% | 32.4% | (many diffs) |
| 13 | human | 27300 | ZNF544 | zinc finger protein 544 | NM_001320777.2 | 47.2% | 32.9% | (many diffs) |
| 14 | human | 27300 | ZNF544 | zinc finger protein 544 | XM_017026601.1 | 46.9% | 34.4% | (many diffs) |
| 15 | human | 27300 | ZNF544 | zinc finger protein 544 | XM_017026602.1 | 46.2% | 34.5% | (many diffs) |
| 16 | human | 27300 | ZNF544 | zinc finger protein 544 | XM_017026600.1 | 45.8% | 34.2% | (many diffs) |
| 17 | human | 27300 | ZNF544 | zinc finger protein 544 | XM_017026604.1 | 45.4% | 33.3% | (many diffs) |
| 18 | human | 27300 | ZNF544 | zinc finger protein 544 | NM_001320781.1 | 44.2% | 33.9% | (many diffs) |
| 19 | human | 27300 | ZNF544 | zinc finger protein 544 | XM_017026603.1 | 44.2% | 33.9% | (many diffs) |
| 20 | human | 27300 | ZNF544 | zinc finger protein 544 | XM_017026605.1 | 43.7% | 32.7% | 1_162del;321_322ins35;372_373ins73 |
| 21 | human | 27300 | ZNF544 | zinc finger protein 544 | XR_001753665.2 | 25% | (many diffs) | |
| 22 | human | 27300 | ZNF544 | zinc finger protein 544 | NM_001320774.2 | 21.1% | 17.9% | (many diffs) |
| 23 | human | 27300 | ZNF544 | zinc finger protein 544 | NM_001320767.1 | 14% | 11.2% | (many diffs) |
| 24 | human | 27300 | ZNF544 | zinc finger protein 544 | NM_001320769.1 | 14% | 11.2% | (many diffs) |
| 25 | human | 27300 | ZNF544 | zinc finger protein 544 | NM_014480.3 | 14% | 11.2% | (many diffs) |
| 26 | human | 27300 | ZNF544 | zinc finger protein 544 | XM_011526738.2 | 13% | 10.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 384
- ORF length:
- 318
- Sequence:
-
1 ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag 61 ttggcatgga agcacgttct atgctggttc caccccaggc atctgtgtgc ttcgaggatg 121 tggctatggc attcacacag gaggagtggg aacagctgga cctggcccag aggacactgt 181 accgagaggt gacactggag acctgggagc atattgtctc cctggggctt ttcctttcca 241 aatctgatgt gatctctcag ctggagcaag aagaggacct gtgcagggca gagcaggagg 301 ccccccgagg tacttcaggt ctttcacaag tcacaggtgt agtggctgat gggagcttca 361 ggttcccggt ctgggacttc acatnnccaa ctttcttgta caaagtggtt ggtaagccta 421 tccctaaccc tctcctcggt ctcgattcta cgtagtaatg agctagcgct aaccggtggc 481 gcgttaagtc gacaatcaac ctctggatta