Construct: ORF ccsbBroad304_15923

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF011805.1_s304c1, BRDN0000404732
Derived from:
ccsbBroadEn_15923
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
TMPRSS4 (56649)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_15923
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 56649 TMPRSS4 transmembrane serine protea... XM_011542903.3 90.2% 83.3% (many diffs)
2 human 56649 TMPRSS4 transmembrane serine protea... NM_001173551.1 77% 77% 1006_1305del
3 human 56649 TMPRSS4 transmembrane serine protea... NM_019894.4 76.5% 76.2% 3_8delGTTACA;623T>G;1012_1311del
4 human 56649 TMPRSS4 transmembrane serine protea... NM_001083947.1 75.5% 75.2% 3_8delGTTACA;437_438insCAGCAAACCCACTTT;997_1296del
5 human 56649 TMPRSS4 transmembrane serine protea... NM_001290094.1 71.7% 71.7% 0_1ins69;937_1236del
6 human 56649 TMPRSS4 transmembrane serine protea... NM_001173552.1 68.2% 68% 37_38ins114;892_1191del
7 human 56649 TMPRSS4 transmembrane serine protea... XM_005271614.3 68% 67.8% 617T>G;1006_1476del
8 human 56649 TMPRSS4 transmembrane serine protea... XM_005271613.4 67.7% 67.4% 3_8delGTTACA;623T>G;1012_1482del
9 human 56649 TMPRSS4 transmembrane serine protea... XM_011542901.2 66.7% 66.3% (many diffs)
10 human 56649 TMPRSS4 transmembrane serine protea... XM_011542904.2 66.6% 56.6% (many diffs)
11 human 56649 TMPRSS4 transmembrane serine protea... XM_005271615.3 60.2% 59.9% 37_38ins114;503T>G;892_1362del
12 human 56649 TMPRSS4 transmembrane serine protea... XM_011542902.2 60% 59.5% (many diffs)
13 human 56649 TMPRSS4 transmembrane serine protea... NM_001290096.1 43.6% 43.6% 0_1ins420;11_12insCAGCAAACCCACTTT;571_870del
14 human 56649 TMPRSS4 transmembrane serine protea... NR_110734.1 29.5% 1_291del;1297_3400del
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1071
ORF length:
1005
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgga tcctgacagt gatcaacctc tgaacagcct cgatgtcaaa cccctgcgca
121aaccccgtat ccccatggag accttcagaa aggtggggat ccccatcatc atagcactac
181tgagcctggc gagtatcatc attgtggttg tcctcatcaa ggtgattctg gataaatact
241acttcctctg cgggcagcct ctccacttca tcccgaggaa gcagctgtgt gacggagagc
301tggactgtcc cttgggggag gacgaggagc actgtgtcaa gagcttcccc gaagggcctg
361cagtggcagt ccgcctctcc aaggaccgat ccacactgca ggtgctggac tcggccacag
421ggaactggtt ctctgcctgt ttcgacaact tcacagaagc tctcgctgag acagcctgta
481ggcagatggg ctacagcagc aaacccactt tcagagctgt ggagattggc ccagaccagg
541atctggatgt tgttgaaatc acagaaaaca gccaggagct tcgcatgcgg aactcaagtg
601ggccctgtct ctcaggctcc ctggtctccc tgcactgtct tgcctgtggg aagagcctga
661agaccccccg tgtggtgggt ggggaggagg cctctgtgga ttcttggcct tggcaggtca
721gcatccagta cgacaaacag cacgtctgtg gagggagcat cctggacccc cactgggtcc
781tcacggcagc ccactgcttc aggaaacata ccgatgtgtt caactggaag gtgcgggcag
841gctcagacaa actgggcagc ttcccatccc tggctgtggc caagatcatc atcattgaat
901tcaaccccat gtaccccaaa gacaatgaca tcgccctcat gaagctgcag ttcccactca
961ctttctcagg cacagtcagg cccatctgtc tgcccttctt tgatgaggag ctcactccag
1021ccaccccact ctggatcatt ggatggggct ttacgaagca gaatggaggg tnnccaactt
1081tcttgtacaa agtggttggt aagcctatcc ctaaccctct cctcggtctc gattctacgt
1141agtaatgagc tagcgctaac cggtggcgcg ttaagtcgac aatcaacctc tggatta

Download FASTA (ORF) (Full)