Construct: ORF ccsbBroad304_15988

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF018261.1_s304c1, BRDN0000409916
Derived from:
ccsbBroadEn_15988
DNA Barcode:
None
Epitope Tag:
V5
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
KCTD17 (79734)

Vector Information:

Vector Backbone:
pLX_304
Pol II Cassette 1:
PGK-BlastR
Pol II Cassette 2:
CMV-ccsbBroad304_15988
Selection Marker:
BlastR
Visible Reporter:
n/a
Epitope Tag:
V5

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 79734 KCTD17 potassium channel tetrameri... NM_024681.3 81.9% 80.1% (many diffs)
2 human 79734 KCTD17 potassium channel tetrameri... NM_001282686.1 81.2% 79.9% (many diffs)
3 human 79734 KCTD17 potassium channel tetrameri... NM_001282685.1 80.2% 80.3% (many diffs)
4 human 79734 KCTD17 potassium channel tetrameri... XM_011530377.2 78.5% 72.4% (many diffs)
5 human 79734 KCTD17 potassium channel tetrameri... XM_005261744.2 76.4% 75.2% (many diffs)
6 human 79734 KCTD17 potassium channel tetrameri... NM_001282684.1 75.7% 73.6% (many diffs)
7 human 79734 KCTD17 potassium channel tetrameri... XM_005261743.3 74.2% 72.5% (many diffs)
8 human 79734 KCTD17 potassium channel tetrameri... XM_005261741.3 69.1% 67.2% (many diffs)
9 human 79734 KCTD17 potassium channel tetrameri... XM_005261742.3 69% 67.2% (many diffs)
10 human 79734 KCTD17 potassium channel tetrameri... XM_011530374.2 62.5% 51.6% (many diffs)
11 human 79734 KCTD17 potassium channel tetrameri... XR_937917.2 35.9% (many diffs)
12 human 79734 KCTD17 potassium channel tetrameri... XR_001755296.1 34.2% (many diffs)
13 mouse 72844 Kctd17 potassium channel tetrameri... NM_001289671.1 74.2% 75.1% (many diffs)
14 mouse 72844 Kctd17 potassium channel tetrameri... NM_001289673.1 73.8% 77.1% (many diffs)
15 mouse 72844 Kctd17 potassium channel tetrameri... NM_001289672.1 73.3% 77.5% (many diffs)
16 mouse 72844 Kctd17 potassium channel tetrameri... XM_006521461.3 68.5% 61.9% (many diffs)
17 mouse 72844 Kctd17 potassium channel tetrameri... XM_006521460.3 60.3% 61% (many diffs)
18 mouse 72844 Kctd17 potassium channel tetrameri... NR_110357.1 38% (many diffs)
19 mouse 72844 Kctd17 potassium channel tetrameri... XR_001781569.1 31.9% (many diffs)
20 mouse 72844 Kctd17 potassium channel tetrameri... XR_001781568.1 31.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
807
ORF length:
741
Sequence:
1ggtctatata agcagagctc tctggctaac tgtcgggatc aacaagtttg tacaaaaaag
61ttggcatgag gatggaggcc ggggaggcag cgccgccggc gggggcgggc ggccgcgcca
121caggcggctg gggcaagtgg gtgcggctca acgtgggggg cacggtgttc ctgaccaccc
181ggcagacgct gtgccgcgag cagaagtcct tcctcagccg cctgtgccag ggggaagagc
241tgcagtcgga ccgggatgag accggggcct acctcattga ccgtgacccc acctacttcg
301ggcccatcct gaacttcctc cggcatggca agctggtgct ggacaaggac atggctgagg
361agggggtcct ggaggaagcc gagttctaca acatcggccc gctgatccgc atcatcaaag
421accggatgga agagaaggac tacacggtca cccaggtccc acccaagcac gtgtaccgcg
481tgctgcagtg ccaggaggag gagctcacgc aaatggtctc caccatgtct gatggctggc
541gcttcgagca gctggtgaac atcggctcct cctacaacta cggcagcgag gaccaggcag
601agttcctgtg tgtggtgtcc aaggagctcc acagcacccc aaacgggctg agctcagagt
661ccagccgcaa aaccaagagc acggaggagc agctggagga gcagcagcag caggaggagg
721aggtggagga ggtggaggtg gaacaggtgc aggtggaggc agatgcacag gagaaaggtg
781cagccaaccc ccaggaggat gattgctnnc caactttctt gtacaaagtg gttggtaagc
841ctatccctaa ccctctcctc ggtctcgatt ctacgtagta atgagctagc gctaaccggt
901ggcgcgttaa gtcgacaatc aacctctgga tta

Download FASTA (ORF) (Full)