Transcript: Human XM_005261744.2

PREDICTED: Homo sapiens potassium channel tetramerization domain containing 17 (KCTD17), transcript variant X6, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
KCTD17 (79734)
Length:
1614
CDS:
16..963

Additional Resources:

NCBI RefSeq record:
XM_005261744.2
NBCI Gene record:
KCTD17 (79734)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_005261744.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000166543 CCTGGGCATAACACTGTGTTT pLKO.1 1279 3UTR 100% 4.950 6.930 N KCTD17 n/a
2 TRCN0000160639 CATAACACTGTGTTTGCAAAT pLKO.1 1285 3UTR 100% 10.800 7.560 N KCTD17 n/a
3 TRCN0000159132 GCAAATGGAGATTCAGGTATT pLKO.1 1300 3UTR 100% 10.800 7.560 N KCTD17 n/a
4 TRCN0000445876 CATTGCCTCCTTGAGCCTTAG pLKO_005 1112 3UTR 100% 6.000 4.200 N KCTD17 n/a
5 TRCN0000165606 GCTGATCCGCATCATCAAAGA pLKO.1 372 CDS 100% 4.950 3.465 N KCTD17 n/a
6 TRCN0000166132 CATCATCAAAGACCGGATGGA pLKO.1 381 CDS 100% 2.640 1.848 N KCTD17 n/a
7 TRCN0000166419 CAAATGGTCTCCACCATGTCT pLKO.1 481 CDS 100% 0.300 0.210 N KCTD17 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_005261744.2, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_15988 pDONR223 0% 76.4% 75.2% None (many diffs) n/a
2 ccsbBroad304_15988 pLX_304 0% 76.4% 75.2% V5 (many diffs) n/a
3 TRCN0000472221 AAGCCTCCGGTCCTAGTCTTCTAG pLX_317 54.5% 76.4% 75.2% V5 (many diffs) n/a
4 ccsbBroadEn_12606 pDONR223 100% 75% 76.7% None (many diffs) n/a
5 ccsbBroad304_12606 pLX_304 0% 75% 76.7% V5 (many diffs) n/a
6 TRCN0000477154 GTAGAGTCCTTCGTTGACGGTCCA pLX_317 35.8% 75% 76.7% V5 (many diffs) n/a
7 ccsbBroadEn_14270 pDONR223 98.5% 69.8% 72.2% None (many diffs) n/a
8 ccsbBroad304_14270 pLX_304 0% 69.8% 72.2% V5 (many diffs) n/a
9 TRCN0000470392 TCTGCGCGATATGTCTGATCTCAC pLX_317 54.6% 69.8% 72.2% V5 (many diffs) n/a
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