Construct: ORF ccsbBroadEn_00072
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF005522.1_s300c1, BRDN0000389651
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ANXA7 (310)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 310 | ANXA7 | annexin A7 | NM_001156.5 | 100% | 100% | |
| 2 | human | 310 | ANXA7 | annexin A7 | XM_017016163.2 | 100% | 100% | |
| 3 | human | 310 | ANXA7 | annexin A7 | NM_004034.4 | 95.4% | 95.4% | 436_501del |
| 4 | human | 310 | ANXA7 | annexin A7 | XM_017016162.2 | 95.4% | 95.4% | 436_501del |
| 5 | human | 310 | ANXA7 | annexin A7 | NM_001320879.2 | 91.4% | 91.4% | 0_1ins120 |
| 6 | human | 310 | ANXA7 | annexin A7 | NM_001320880.2 | 87.2% | 87.2% | 0_1ins120;316_381del |
| 7 | mouse | 11750 | Anxa7 | annexin A7 | NM_001110794.1 | 86.9% | 92% | (many diffs) |
| 8 | mouse | 11750 | Anxa7 | annexin A7 | NM_009674.3 | 86.9% | 92% | (many diffs) |
| 9 | mouse | 11750 | Anxa7 | annexin A7 | XM_006518452.2 | 83.2% | 87.9% | (many diffs) |
| 10 | mouse | 11750 | Anxa7 | annexin A7 | XM_006518453.3 | 83.2% | 87.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1464
- ORF length:
- 1398
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGTC ATACCCAGGC TATCCCCCAA CAGGCTACCC ACCTTTCCCT GGATATCCTC 121 CTGCAGGTCA GGAGTCATCT TTTCCCCCTT CTGGTCAGTA TCCTTATCCT AGTGGCTTTC 181 CTCCAATGGG AGGAGGTGCC TACCCACAAG TGCCAAGTAG TGGCTACCCA GGAGCTGGAG 241 GCTACCCTGC GCCTGGAGGT TATCCAGCCC CTGGAGGCTA TCCTGGTGCC CCACAGCCAG 301 GGGGAGCTCC ATCCTATCCC GGAGTTCCTC CAGGCCAAGG ATTTGGAGTC CCACCAGGTG 361 GAGCAGGCTT TTCTGGGTAT CCACAGCCAC CTTCACAGTC TTATGGAGGT GGTCCAGCAC 421 AGGTTCCACT ACCTGGTGGC TTTCCTGGAG GACAGATGCC TTCTCAGTAT CCTGGAGGAC 481 AACCTACTTA CCCTAGTCAG CCTGCCACAG TGACTCAGGT CACTCAAGGA ACTATCCGAC 541 CAGCTGCCAA CTTCGATGCT ATAAGAGATG CAGAAATTCT TCGTAAGGCA ATGAAGGGTT 601 TTGGGACAGA TGAGCAGGCA ATTGTGGATG TGGTGGCCAA CCGTTCCAAT GATCAGAGGC 661 AAAAAATTAA AGCAGCATTT AAGACCTCCT ATGGCAAGGA TTTAATCAAA GATCTCAAAT 721 CAGAGTTAAG TGGAAATATG GAAGAACTGA TCCTGGCCCT CTTCATGCCT CCTACGTATT 781 ACGATGCCTG GAGCTTACGG AAAGCAATGC AGGGAGCAGG AACTCAGGAA CGTGTATTGA 841 TTGAGATTTT GTGCACAAGA ACAAATCAGG AAATCCGAGA AATTGTCAGA TGTTATCAGT 901 CAGAATTTGG ACGAGACCTT GAAAAGGACA TTAGGTCAGA TACATCAGGA CATTTTGAAC 961 GTTTACTTGT GTCCATGTGC CAGGGAAATC GTGATGAGAA CCAGAGTATA AACCACCAAA 1021 TGGCTCAGGA AGATGCTCAG CGTCTCTATC AAGCTGGTGA GGGGAGACTA GGGACCGATG 1081 AATCTTGCTT TAACATGATC CTTGCCACAA GAAGCTTTCC TCAGCTGAGA GCTACCATGG 1141 AGGCTTATTC TAGGATGGCT AATCGAGACT TGTTAAGCAG TGTGAGCCGT GAGTTTTCCG 1201 GATATGTAGA AAGTGGTTTG AAGACCATCT TGCAGTGTGC CCTGAACCGC CCTGCCTTCT 1261 TTGCTGAGAG GCTCTACTAT GCTATGAAAG GTGCTGGCAC AGATGACTCC ACCCTGGTCC 1321 GGATTGTGGT CACTCGAAGT GAGATTGACC TTGTACAAAT AAAACAGATG TTCGCTCAGA 1381 TGTATCAGAA GACTCTGGGC ACAATGATTG CAGGTGACAC GAGTGGAGAT TACCGAAGAC 1441 TTCTTCTGGC TATTGTGGGC CAGTACCCAA CTTTCTTGTA CAAAGTtggc attataagaa 1501 agcattgctt atcaatttgt tgcaacgaac