Construct: ORF ccsbBroadEn_00359

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003180.1_s300c1, BRDN0000395718
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
CPT1A (1374)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 1374 CPT1A carnitine palmitoyltransfer... NM_001031847.2 100% 100%
2 human 1374 CPT1A carnitine palmitoyltransfer... NM_001876.4 97.1% 95.3% (many diffs)
3 human 1374 CPT1A carnitine palmitoyltransfer... XM_017017220.1 97.1% 95.3% (many diffs)
4 human 1374 CPT1A carnitine palmitoyltransfer... XM_005273763.1 95.8% 95.9% 1_96del;1347T>C
5 human 1374 CPT1A carnitine palmitoyltransfer... XM_005273762.3 93.3% 91.6% (many diffs)
6 mouse 12894 Cpt1a carnitine palmitoyltransfer... NM_013495.2 79.8% 82.8% (many diffs)
7 mouse 12894 Cpt1a carnitine palmitoyltransfer... XM_006531654.2 79.8% 82.8% (many diffs)
8 mouse 12894 Cpt1a carnitine palmitoyltransfer... XM_006531655.2 79.8% 82.8% (many diffs)
9 mouse 12894 Cpt1a carnitine palmitoyltransfer... XM_006531658.3 79.8% 82.8% (many diffs)
10 mouse 12894 Cpt1a carnitine palmitoyltransfer... XM_006531659.2 79.8% 82.8% (many diffs)
11 mouse 12894 Cpt1a carnitine palmitoyltransfer... XM_011248602.2 77.3% 80.2% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
2334
ORF length:
2268
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC AGAAGCTCAC CAAGCTGTGG CCTTTCAGTT CACGGTCACT CCGGACGGGA
121TTGACCTGCG GCTGAGCCAT GAAGCTCTTA GACAAATCTA TCTCTCTGGA CTTCATTCCT
181GGAAAAAGAA GTTCATCAGA TTCAAGAACG GCATCATCAC TGGCGTGTAC CCGGCAAGCC
241CCTCCAGTTG GCTTATCGTG GTGGTGGGCG TGATGACAAC GATGTACGCC AAGATCGACC
301CCTCGTTAGG AATAATTGCA AAAATCAATC GGACTCTGGA AACGGCCAAC TGCATGTCCA
361GCCAGACGAA GAACGTGGTC AGCGGCGTGC TGTTTGGCAC CGGCCTGTGG GTGGCCCTCA
421TCGTCACCAT GCGCTACTCC CTGAAAGTGC TGCTCTCCTA CCACGGGTGG ATGTTCACTG
481AGCACGGCAA GATGAGTCGT GCCACCAAGA TCTGGATGGG TATGGTCAAG ATCTTTTCAG
541GCCGAAAACC CATGTTGTAC AGCTTCCAGA CATCGCTGCC TCGCCTGCCG GTCCCGGCTG
601TCAAAGACAC TGTGAACAGG TATCTACAGT CGGTGAGGCC TCTTATGAAG GAAGAAGACT
661TCAAACGGAT GACAGCACTT GCTCAAGATT TTGCTGTCGG TCTTGGACCA AGATTACAGT
721GGTATTTGAA GTTAAAATCC TGGTGGGCTA CAAATTACGT GAGCGACTGG TGGGAGGAGT
781ACATCTACCT CCGAGGACGA GGGCCGCTCA TGGTGAACAG CAACTATTAT GCCATGGATC
841TGCTGTATAT CCTTCCAACT CACATTCAGG CAGCAAGAGC CGGCAACGCC ATCCATGCCA
901TCCTGCTTTA CAGGCGCAAA CTGGACCGGG AGGAAATCAA ACCAATTCGT CTTTTGGGAT
961CCACGATTCC ACTCTGCTCC GCTCAGTGGG AGCGGATGTT TAATACTTCC CGGATCCCAG
1021GAGAGGAGAC AGACACCATC CAGCACATGA GAGACAGCAA GCACATCGTC GTGTACCATC
1081GAGGACGCTA CTTCAAGGTC TGGCTCTACC ATGATGGGCG GCTGCTGAAG CCCCGGGAGA
1141TGGAGCAGCA GATGCAGAGG ATCCTGGACA ATACCTCGGA GCCTCAGCCC GGGGAGGCCA
1201GGCTGGCAGC CCTCACCGCA GGAGACAGAG TTCCCTGGGC CAGGTGTCGT CAGGCCTATT
1261TTGGACGTGG GAAAAATAAG CAGTCTCTTG ATGCTGTGGA GAAAGCAGCG TTCTTCGTGA
1321CGTTAGATGA AACTGAAGAA GGATACAGAA GTGAAGACCC GGATACGTCA ATGGACAGCT
1381ACGCCAAATC TCTACTACAC GGCCGATGTT ACGACAGGTG GTTTGACAAG TCGTTCACGT
1441TTGTTGTCTT CAAAAACGGG AAGATGGGCC TCAACGCTGA ACACTCCTGG GCAGATGCGC
1501CGATCGTGGC CCACCTTTGG GAGTACGTCA TGTCCATTGA CAGCCTCCAG CTGGGCTATG
1561CGGAGGATGG GCACTGCAAA GGCGACATCA ATCCGAACAT TCCGTACCCC ACCAGGCTGC
1621AGTGGGACAT CCCGGGGGAA TGTCAAGAGG TTATAGAGAC CTCCCTGAAC ACCGCAAATC
1681TTCTGGCAAA CGACGTGGAT TTCCATTCCT TCCCATTCGT AGCCTTTGGT AAAGGAATCA
1741TCAAGAAATG TCGCACGAGC CCAGACGCCT TTGTGCAGCT GGCCCTCCAG CTGGCGCACT
1801ACAAGGACAT GGGCAAGTTT TGCCTCACAT ACGAGGCCTC CATGACCCGG CTCTTCCGAG
1861AGGGGAGGAC GGAGACCGTG CGCTCCTGCA CCACTGAGTC ATGCGACTTC GTGCGGGCCA
1921TGGTGGACCC GGCCCAGACG GTGGAACAGA GGCTGAAGTT GTTCAAGTTG GCGTCTGAGA
1981AGCATCAGCA TATGTATCGC CTCGCCATGA CCGGCTCTGG GATCGATCGT CACCTCTTCT
2041GCCTTTACGT GGTGTCTAAA TATCTCGCTG TGGAGTCCCC TTTCCTTAAG GAAGTTTTAT
2101CTGAGCCTTG GAGATTATCA ACAAGCCAGA CCCCTCAGCA GCAAGTGGAG CTGTTTGACT
2161TGGAGAATAA CCCAGAGTAC GTGTCCAGCG GAGGGGGCTT TGGACCGGTT GCTGATGACG
2221GCTATGGTGT GTCGTACATC CTTGTGGGAG AGAACCTCAT CAATTTCCAC ATTTCTTCCA
2281AGTTCTCTTG CCCTGAGACG GGGATTATAA GTCAAGGACC AAGTTCAGAT ACTTGCCCAA
2341CTTTCTTGTA CAAAGTtggc attataagaa agcattgctt atcaatttgt tgcaacgaac

Download FASTA (ORF) (Full)

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