Construct: ORF ccsbBroadEn_00632
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009028.1_s300c1, BRDN0000386602
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- GGCX (2677)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 2677 | GGCX | gamma-glutamyl carboxylase | NM_000821.7 | 100% | 100% | |
| 2 | human | 2677 | GGCX | gamma-glutamyl carboxylase | XM_005264259.5 | 99.7% | 99.7% | 1887_1888insGAAACA |
| 3 | human | 2677 | GGCX | gamma-glutamyl carboxylase | NM_001142269.4 | 92.4% | 92.4% | 42_43ins171 |
| 4 | human | 2677 | GGCX | gamma-glutamyl carboxylase | XM_017003803.2 | 92.2% | 92.2% | 42_43ins171;1716_1717insGAAACA |
| 5 | human | 2677 | GGCX | gamma-glutamyl carboxylase | XR_001738703.2 | 65.8% | 1_65del;1351_1352ins152;2188_3071del | |
| 6 | human | 2677 | GGCX | gamma-glutamyl carboxylase | XM_011532764.3 | 63.8% | 60.1% | 0_1ins658;67_68ins164 |
| 7 | human | 2677 | GGCX | gamma-glutamyl carboxylase | XM_011532765.3 | 63.8% | 60.1% | 0_1ins658;67_68ins164 |
| 8 | human | 2677 | GGCX | gamma-glutamyl carboxylase | NM_001311312.2 | 17.2% | 16.7% | (many diffs) |
| 9 | mouse | 56316 | Ggcx | gamma-glutamyl carboxylase | NM_019802.5 | 86.9% | 89.4% | (many diffs) |
| 10 | mouse | 56316 | Ggcx | gamma-glutamyl carboxylase | XM_006506414.3 | 73% | 75.7% | (many diffs) |
| 11 | mouse | 56316 | Ggcx | gamma-glutamyl carboxylase | XR_001785157.1 | 62.3% | (many diffs) | |
| 12 | mouse | 56316 | Ggcx | gamma-glutamyl carboxylase | XM_006506416.3 | 61.3% | 63.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2340
- ORF length:
- 2274
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGC GGTGTCTGCC GGGTCCGCGC GGACCTCGCC CAGCTCAGAT AAAGTACAGA 121 AAGACAAGGC TGAACTGATC TCAGGGCCCA GGCAGGACAG CCGAATAGGG AAACTCTTGG 181 GTTTTGAGTG GACAGATTTG TCCAGTTGGC GGAGGCTGGT GACCCTGCTG AATCGACCAA 241 CGGACCCTGC AAGCTTAGCT GTCTTTCGTT TTCTTTTTGG GTTCTTGATG GTGCTAGACA 301 TTCCCCAGGA GCGGGGGCTC AGCTCTCTGG ACCGGAAATA CCTTGATGGG CTGGATGTGT 361 GCCGCTTCCC CTTGCTGGAT GCCCTACGCC CACTGCCACT TGACTGGATG TATCTTGTCT 421 ACACCATCAT GTTTCTGGGG GCACTGGGCA TGATGCTGGG CCTGTGCTAC CGGATAAGCT 481 GTGTGTTATT CCTGCTGCCA TACTGGTATG TGTTTCTCCT GGACAAGACA TCATGGAACA 541 ACCACTCCTA TCTGTATGGG TTGTTGGCCT TTCAGCTAAC ATTCATGGAT GCAAACCACT 601 ACTGGTCTGT GGACGGTCTG CTGAATGCCC ATAGGAGGAA TGCCCACGTG CCCCTTTGGA 661 ACTATGCAGT GCTCCGTGGC CAGATCTTCA TTGTGTACTT CATTGCGGGT GTGAAAAAGC 721 TGGATGCAGA CTGGGTTGAA GGCTATTCCA TGGAATATTT GTCCCGGCAC TGGCTCTTCA 781 GTCCCTTCAA ACTGCTGTTG TCTGAGGAGC TGACTAGCCT GCTGGTCGTG CACTGGGGTG 841 GGCTGCTGCT TGACCTCTCA GCTGGTTTCC TGCTCTTTTT TGATGTCTCA AGATCCATTG 901 GCCTGTTCTT TGTGTCCTAC TTCCACTGCA TGAATTCCCA GCTTTTCAGC ATTGGTATGT 961 TCTCCTACGT CATGCTGGCC AGCAGCCCTC TCTTCTGCTC CCCTGAGTGG CCTCGGAAGC 1021 TGGTGTCCTA CTGCCCCCGA AGGTTGCAAC AACTGTTGCC CCTCAAGGCA GCCCCTCAGC 1081 CCAGTGTTTC CTGTGTGTAT AAGAGGAGCC GGGGCAAAAG TGGCCAGAAG CCAGGGCTGC 1141 GCCATCAGCT GGGAGCTGCC TTCACCCTGC TCTACCTCCT GGAGCAGCTA TTCCTGCCCT 1201 ATTCTCATTT TCTCACCCAG GGCTATAACA ACTGGACAAA TGGGCTGTAT GGCTATTCCT 1261 GGGACATGAT GGTGCACTCC CGCTCCCACC AGCACGTGAA GATCACCTAC CGTGATGGCC 1321 GCACTGGCGA ACTGGGCTAC CTTAACCCTG GGGTATTTAC ACAGAGTCGG CGATGGAAGG 1381 ATCATGCAGA CATGCTGAAG CAATATGCCA CTTGCCTGAG CCGCCTGCTT CCCAAGTATA 1441 ATGTCACTGA GCCCCAGATC TACTTTGATA TTTGGGTCTC CATCAATGAC CGCTTCCAGC 1501 AGAGGATTTT TGACCCTCGT GTGGACATCG TGCAGGCCGC TTGGTCACCC TTTCAGCGCA 1561 CATCCTGGGT GCAACCACTC TTGATGGACC TGTCTCCCTG GAGGGCCAAG TTACAGGAAA 1621 TCAAGAGCAG CCTAGACAAC CACACTGAGG TGGTCTTCAT TGCAGATTTC CCTGGACTGC 1681 ACTTGGAGAA TTTTGTGAGT GAAGACCTGG GCAACACTAG CATCCAGCTG CTGCAGGGGG 1741 AAGTGACTGT GGAGCTTGTG GCAGAACAGA AGAACCAGAC TCTTCGAGAG GGAGAAAAAA 1801 TGCAGTTGCC TGCTGGTGAG TACCATAAGG TGTATACGAC ATCACCTAGC CCTTCTTGCT 1861 ACATGTACGT CTATGTCAAC ACTACAGAGC TTGCACTGGA GCAAGACCTG GCATATCTGC 1921 AAGAATTAAA GGAAAAGGTG GAGAATGGAA GTGAAACAGG GCCTCTACCC CCAGAGCTGC 1981 AGCCTCTGTT GGAAGGGGAA GTAAAAGGGG GCCCTGAGCC AACACCTCTG GTTCAGACCT 2041 TTCTTAGACG CCAACAAAGG CTCCAGGAGA TTGAACGCCG GCGAAATACT CCTTTCCATG 2101 AGCGATTCTT CCGCTTCTTG TTGCGAAAGC TCTATGTCTT TCGCCGCAGC TTCCTGATGA 2161 CTTGTATCTC ACTTCGAAAT CTGATATTAG GCCGTCCTTC CCTGGAGCAG CTGGCCCAGG 2221 AGGTGACTTA TGCAAACTTG AGACCCTTTG AGGCAGTTGG AGAACTGAAT CCCTCAAACA 2281 CGGATTCTTC ACATTCTAAT CCTCCTGAGT CAAATCCTGA TCCTGTCCAC TCAGAGTTCT 2341 GCCCAACTTT CTTGTACAAA GTtggcatta taagaaagca ttgcttatca atttgttgca 2401 acgaac