Construct: ORF ccsbBroadEn_00920

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF007865.1_s300c1, BRDN0000394695
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
KRT31 (3881)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 3881 KRT31 keratin 31 NM_002277.3 100% 100%
2 human 3884 KRT33B keratin 33B NM_002279.5 91.2% 91.3% (many diffs)
3 human 3883 KRT33A keratin 33A NM_004138.4 90% 90.8% (many diffs)
4 human 100653049 LOC100653049 keratin, type I cuticular Ha4 XM_011547005.2 81.9% 80.6% (many diffs)
5 human 3885 KRT34 keratin 34 XM_011524793.2 81.9% 80.4% (many diffs)
6 human 100653049 LOC100653049 keratin, type I cuticular Ha4 XM_003403882.5 77.6% 76.4% (many diffs)
7 human 3885 KRT34 keratin 34 NM_021013.3 77.6% 76.2% (many diffs)
8 human 3883 KRT33A keratin 33A XM_011524786.3 50.5% 48.2% (many diffs)
9 mouse 16660 Krt31 keratin 31 NM_010659.2 86.5% 89.9% (many diffs)
10 mouse 16671 Krt33b keratin 33B NM_013570.1 84.5% 85.3% (many diffs)
11 mouse 71888 Krt33a keratin 33A NM_027983.3 84% 86.7% (many diffs)
12 mouse 16672 Krt34 keratin 34 NM_027563.4 80.7% 83.4% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1317
ORF length:
1248
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GCCCTACAAC TTCTGCCTGC CCAGCCTGAG CTGCCGCACC AGCTGCTCCT
121CCCGGCCCTG CGTGCCCCCC AGCTGCCACA GCTGCACCCT GCCCGGGGCC TGCAACATCC
181CCGCCAATGT GAGCAACTGC AACTGGTTCT GCGAGGGCTC CTTCAATGGT AGCGAGAAGG
241AGACTATGCA GTTCCTGAAC GACCGCCTGG CCAGCTACCT GGAGAAAGTG CGTCAGCTGG
301AGCGGGACAA CGCGGAGCTG GAGAACCTCA TCCGGGAGCG GTCTCAGCAG CAGGAGCCCT
361TGCTGTGCCC CAGTTACCAG TCCTATTTTA AGACCATTGA GGAGCTCCAG CAGAAGATCC
421TGTGTACCAA GTCTGAGAAT GCCAGGCTTG TGGTGCAGAT CGACAACGCC AAGCTGGCTG
481CGGATGATTT CAGAACCAAG TACCAGACCG AGCTGTCCCT GCGGCAGCTG GTGGAGTCGG
541ACATCAACGG TCTGCGCAGG ATCCTGGATG AGCTGACCCT GTGCAAGTCC GACCTGGAGG
601CCCAGGTGGA GTCCCTGAAG GAGGAGCTGC TCTGCCTCAA GAGCAACCAT GAGCAGGAGG
661TCAATACCCT GCGCTGCCAG CTTGGAGACC GCCTCAATGT GGAGGTGGAT GCTGCTCCCA
721CTGTGGACCT GAATCGGGTG CTGAACGAGA CCAGGAGTCA GTATGAGGCC CTGGTGGAAA
781CCAACCGCAG GGAAGTGGAG CAATGGTTCA CCACGCAGAC CGAGGAGCTG AACAAGCAGG
841TGGTATCCAG CTCAGAGCAG CTGCAGTCCT ACCAGGCGGA GATCATCGAG CTGAGACGCA
901CAGTCAACGC CCTGGAGATC GAGCTGCAGG CCCAGCACAA CCTGCGAGAC TCTCTGGAAA
961ACACGCTGAC AGAGAGTGAG GCCCGCTACA GCTCCCAGCT GTCCCAGGTG CAGAGCCTGA
1021TCACCAACGT GGAGTCCCAG CTGGCGGAGA TCCGCAGTGA CCTGGAGCGG CAGAACCAGG
1081AGTACCAGGT GCTGCTGGAT GTGCGTGCCC GGCTGGAGTG TGAGATCAAC ACATACCGGA
1141GCCTGCTGGA GAGCGAGGAC TGCAATCTGC CCAGCAATCC CTGTGCCACG ACCAACGCGT
1201GCAGCAAGCC CATCGGACCC TGTCTCTCCA ATCCCTGTAC CTCTTGTGTC CCTCCTGCCC
1261CCTGCACACC CTGTGCCCCA CGCCCCCGCT GTGGGCCCTG CAATTCCTTC GTGCGCTTGC
1321CAACTTTCTT GTACAAAGTt ggcattataa gaaagcattg cttatcaatt tgttgcaacg
1381aac

Download FASTA (ORF) (Full)

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