Construct: ORF ccsbBroadEn_01113
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF008051.1_s300c1, BRDN0000387378
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- NTRK2 (4915)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 4915 | NTRK2 | neurotrophic receptor tyros... | NM_001007097.3 | 100% | 100% | |
| 2 | human | 4915 | NTRK2 | neurotrophic receptor tyros... | NM_001369539.1 | 100% | 100% | |
| 3 | human | 4915 | NTRK2 | neurotrophic receptor tyros... | NM_001369540.1 | 100% | 100% | |
| 4 | human | 4915 | NTRK2 | neurotrophic receptor tyros... | NM_001369541.1 | 100% | 100% | |
| 5 | human | 4915 | NTRK2 | neurotrophic receptor tyros... | NM_001369542.1 | 100% | 100% | |
| 6 | human | 4915 | NTRK2 | neurotrophic receptor tyros... | NM_001369543.1 | 100% | 100% | |
| 7 | human | 4915 | NTRK2 | neurotrophic receptor tyros... | NM_001369544.1 | 100% | 100% | |
| 8 | human | 4915 | NTRK2 | neurotrophic receptor tyros... | NM_001369545.1 | 100% | 100% | |
| 9 | human | 4915 | NTRK2 | neurotrophic receptor tyros... | NM_001369548.1 | 100% | 100% | |
| 10 | human | 4915 | NTRK2 | neurotrophic receptor tyros... | NM_001369549.1 | 100% | 100% | |
| 11 | human | 4915 | NTRK2 | neurotrophic receptor tyros... | XM_017014760.2 | 100% | 100% | |
| 12 | human | 4915 | NTRK2 | neurotrophic receptor tyros... | NM_001369547.1 | 98.4% | 97.4% | (many diffs) |
| 13 | human | 4915 | NTRK2 | neurotrophic receptor tyros... | NM_001291937.1 | 97.2% | 97% | 853_854ins39 |
| 14 | human | 4915 | NTRK2 | neurotrophic receptor tyros... | NM_001369546.1 | 97.2% | 97% | 853_854ins39 |
| 15 | human | 4915 | NTRK2 | neurotrophic receptor tyros... | NM_001018066.3 | 87.5% | 85.8% | (many diffs) |
| 16 | human | 4915 | NTRK2 | neurotrophic receptor tyros... | NM_001369538.1 | 87.5% | 85.8% | (many diffs) |
| 17 | human | 4915 | NTRK2 | neurotrophic receptor tyros... | XM_011518720.3 | 87.5% | 85.8% | (many diffs) |
| 18 | human | 4915 | NTRK2 | neurotrophic receptor tyros... | NM_001018065.2 | 85.8% | 83.7% | (many diffs) |
| 19 | human | 4915 | NTRK2 | neurotrophic receptor tyros... | NM_001369537.1 | 85.8% | 83.7% | (many diffs) |
| 20 | human | 4915 | NTRK2 | neurotrophic receptor tyros... | XM_005252006.4 | 85.8% | 83.7% | (many diffs) |
| 21 | human | 4915 | NTRK2 | neurotrophic receptor tyros... | XM_017014755.1 | 85.8% | 83.7% | (many diffs) |
| 22 | human | 4915 | NTRK2 | neurotrophic receptor tyros... | NM_001369550.1 | 67.2% | 67.2% | 0_1ins468 |
| 23 | human | 4915 | NTRK2 | neurotrophic receptor tyros... | NM_001369551.1 | 67.2% | 67.2% | 0_1ins468 |
| 24 | human | 4915 | NTRK2 | neurotrophic receptor tyros... | NM_001369552.1 | 67.2% | 67.2% | 0_1ins468 |
| 25 | human | 4915 | NTRK2 | neurotrophic receptor tyros... | NM_001018064.3 | 57.2% | 56.3% | (many diffs) |
| 26 | human | 4915 | NTRK2 | neurotrophic receptor tyros... | NM_001369532.1 | 57.2% | 56.3% | (many diffs) |
| 27 | human | 4915 | NTRK2 | neurotrophic receptor tyros... | NM_001369533.1 | 57.2% | 56.3% | (many diffs) |
| 28 | human | 4915 | NTRK2 | neurotrophic receptor tyros... | XM_011518718.3 | 57.2% | 56.3% | (many diffs) |
| 29 | human | 4915 | NTRK2 | neurotrophic receptor tyros... | XM_017014752.1 | 57.2% | 56.3% | (many diffs) |
| 30 | human | 4915 | NTRK2 | neurotrophic receptor tyros... | XM_017014753.2 | 57.2% | 56.3% | (many diffs) |
| 31 | human | 4915 | NTRK2 | neurotrophic receptor tyros... | NM_006180.4 | 56.6% | 55.4% | (many diffs) |
| 32 | human | 4915 | NTRK2 | neurotrophic receptor tyros... | XM_005252001.3 | 56.6% | 55.4% | (many diffs) |
| 33 | human | 4915 | NTRK2 | neurotrophic receptor tyros... | XM_005252003.3 | 56.6% | 55.4% | (many diffs) |
| 34 | human | 4915 | NTRK2 | neurotrophic receptor tyros... | XM_005252004.2 | 56.6% | 55.4% | (many diffs) |
| 35 | human | 4915 | NTRK2 | neurotrophic receptor tyros... | XM_017014751.2 | 56.6% | 55.4% | (many diffs) |
| 36 | human | 4915 | NTRK2 | neurotrophic receptor tyros... | NM_001369534.1 | 55.8% | 54.8% | (many diffs) |
| 37 | human | 4915 | NTRK2 | neurotrophic receptor tyros... | NM_001369535.1 | 38.3% | 37.5% | (many diffs) |
| 38 | human | 4915 | NTRK2 | neurotrophic receptor tyros... | NM_001369536.1 | 38% | 36.9% | (many diffs) |
| 39 | mouse | 18212 | Ntrk2 | neurotrophic tyrosine kinas... | NM_008745.3 | 86.8% | 89.9% | (many diffs) |
| 40 | mouse | 18212 | Ntrk2 | neurotrophic tyrosine kinas... | XM_006517152.3 | 86.8% | 89.9% | (many diffs) |
| 41 | mouse | 18212 | Ntrk2 | neurotrophic tyrosine kinas... | XM_017315420.1 | 86.8% | 89.9% | (many diffs) |
| 42 | mouse | 18212 | Ntrk2 | neurotrophic tyrosine kinas... | XM_006517151.3 | 82.4% | 83.3% | (many diffs) |
| 43 | mouse | 18212 | Ntrk2 | neurotrophic tyrosine kinas... | XM_006517150.3 | 76.1% | 77% | (many diffs) |
| 44 | mouse | 18212 | Ntrk2 | neurotrophic tyrosine kinas... | NM_001025074.2 | 49.8% | 50.5% | (many diffs) |
| 45 | mouse | 18212 | Ntrk2 | neurotrophic tyrosine kinas... | NM_001282961.1 | 49.8% | 50.5% | (many diffs) |
| 46 | mouse | 18212 | Ntrk2 | neurotrophic tyrosine kinas... | XM_006517149.3 | 49.8% | 50.5% | (many diffs) |
| 47 | mouse | 18212 | Ntrk2 | neurotrophic tyrosine kinas... | XM_017315419.1 | 49.8% | 50.5% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1497
- ORF length:
- 1431
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAGAAAG 61 TTGGCATGTC GTCCTGGATA AGGTGGCATG GACCCGCCAT GGCGCGGCTC TGGGGCTTCT 121 GCTGGCTGGT TGTGGGCTTC TGGAGGGCCG CTTTCGCCTG TCCCACGTCC TGCAAATGCA 181 GTGCCTCTCG GATCTGGTGC AGCGACCCTT CTCCTGGCAT CGTGGCATTT CCGAGATTGG 241 AGCCTAACAG TGTAGATCCT GAGAACATCA CCGAAATTTT CATCGCAAAC CAGAAAAGGT 301 TAGAAATCAT CAACGAAGAT GATGTTGAAG CTTATGTGGG ACTGAGAAAT CTGACAATTG 361 TGGATTCTGG ATTAAAATTT GTGGCTCATA AAGCATTTCT GAAAAACAGC AACCTGCAGC 421 ACATCAATTT TACCCGAAAC AAACTGACGA GTTTGTCTAG GAAACATTTC CGTCACCTTG 481 ACTTGTCTGA ACTGATCCTG GTGGGCAATC CATTTACATG CTCCTGTGAC ATTATGTGGA 541 TCAAGACTCT CCAAGAGGCT AAATCCAGTC CAGACACTCA GGATTTGTAC TGCCTGAATG 601 AAAGCAGCAA GAATATTCCC CTGGCAAACC TGCAGATACC CAATTGTGGT TTGCCATCTG 661 CAAATCTGGC CGCACCTAAC CTCACTGTGG AGGAAGGAAA GTCTATCACA TTATCCTGTA 721 GTGTGGCAGG TGATCCGGTT CCTAATATGT ATTGGGATGT TGGTAACCTG GTTTCCAAAC 781 ATATGAATGA AACAAGCCAC ACACAGGGCT CCTTAAGGAT AACTAACATT TCATCCGATG 841 ACAGTGGGAA GCAGATCTCT TGTGTGGCGG AAAATCTTGT AGGAGAAGAT CAAGATTCTG 901 TCAACCTCAC TGTGCATTTT GCACCAACTA TCACATTTCT CGAATCTCCA ACCTCAGACC 961 ACCACTGGTG CATTCCATTC ACTGTGAAAG GCAACCCCAA ACCAGCGCTT CAGTGGTTCT 1021 ATAACGGGGC AATATTGAAT GAGTCCAAAT ACATCTGTAC TAAAATACAT GTTACCAATC 1081 ACACGGAGTA CCACGGCTGC CTCCAGCTGG ATAATCCCAC TCACATGAAC AATGGGGACT 1141 ACACTCTAAT AGCCAAGAAT GAGTATGGGA AGGATGAGAA ACAGATTTCT GCTCACTTCA 1201 TGGGCTGGCC TGGAATTGAC GATGGTGCAA ACCCAAATTA TCCTGATGTA ATTTATGAAG 1261 ATTATGGAAC TGCAGCGAAT GACATCGGGG ACACCACGAA CAGAAGTAAT GAAATCCCTT 1321 CCACAGACGT CACTGATAAA ACCGGTCGGG AACATCTCTC GGTCTATGCT GTGGTGGTGA 1381 TTGCGTCTGT GGTGGGATTT TGCCTTTTGG TAATGCTGTT TCTGCTTAAG TTGGCAAGAC 1441 ACTCCAAGTT TGGCATGAAA GGTTTTGTTT TGTTTCATAA GATCCCACTG GATGGGTACC 1501 CAACTTTCTT GTACAAAGTt ggcattataa gaaagcattg cttatcaatt tgttgcaacg 1561 aac