Construct: ORF ccsbBroadEn_01575
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006951.1_s300c1, BRDN0000388276
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- SNRPN (6638)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 6638 | SNRPN | small nuclear ribonucleopro... | NM_001349454.1 | 100% | 100% | |
| 2 | human | 6638 | SNRPN | small nuclear ribonucleopro... | NM_001349455.1 | 100% | 100% | |
| 3 | human | 6638 | SNRPN | small nuclear ribonucleopro... | NM_001349456.1 | 100% | 100% | |
| 4 | human | 6638 | SNRPN | small nuclear ribonucleopro... | NM_001349457.1 | 100% | 100% | |
| 5 | human | 6638 | SNRPN | small nuclear ribonucleopro... | NM_001349458.1 | 100% | 100% | |
| 6 | human | 6638 | SNRPN | small nuclear ribonucleopro... | NM_001349459.1 | 100% | 100% | |
| 7 | human | 6638 | SNRPN | small nuclear ribonucleopro... | NM_001349460.1 | 100% | 100% | |
| 8 | human | 6638 | SNRPN | small nuclear ribonucleopro... | NM_001349461.1 | 100% | 100% | |
| 9 | human | 6638 | SNRPN | small nuclear ribonucleopro... | NM_001349462.1 | 100% | 100% | |
| 10 | human | 6638 | SNRPN | small nuclear ribonucleopro... | NM_001349463.1 | 100% | 100% | |
| 11 | human | 6638 | SNRPN | small nuclear ribonucleopro... | NM_001349464.1 | 100% | 100% | |
| 12 | human | 6638 | SNRPN | small nuclear ribonucleopro... | NM_001349465.1 | 100% | 100% | |
| 13 | human | 6638 | SNRPN | small nuclear ribonucleopro... | NM_003097.5 | 100% | 100% | |
| 14 | human | 6638 | SNRPN | small nuclear ribonucleopro... | NM_022805.4 | 100% | 100% | |
| 15 | human | 6638 | SNRPN | small nuclear ribonucleopro... | NM_022806.4 | 100% | 100% | |
| 16 | human | 6638 | SNRPN | small nuclear ribonucleopro... | NM_022807.4 | 100% | 100% | |
| 17 | human | 6638 | SNRPN | small nuclear ribonucleopro... | NM_022808.4 | 100% | 100% | |
| 18 | human | 6628 | SNRPB | small nuclear ribonucleopro... | NM_198216.2 | 82% | 92.9% | (many diffs) |
| 19 | human | 6628 | SNRPB | small nuclear ribonucleopro... | NM_003091.4 | 78.6% | 88.3% | (many diffs) |
| 20 | human | 104472715 | SNHG14 | small nucleolar RNA host ge... | NR_146177.1 | 3.7% | 1_902del;1623_19263del | |
| 21 | mouse | 20646 | Snrpn | small nuclear ribonucleopro... | NM_001082961.2 | 91.5% | 100% | (many diffs) |
| 22 | mouse | 20646 | Snrpn | small nuclear ribonucleopro... | NM_001082962.2 | 91.5% | 100% | (many diffs) |
| 23 | mouse | 20646 | Snrpn | small nuclear ribonucleopro... | NM_001349690.1 | 91.5% | 100% | (many diffs) |
| 24 | mouse | 20646 | Snrpn | small nuclear ribonucleopro... | NM_001349691.1 | 91.5% | 100% | (many diffs) |
| 25 | mouse | 20646 | Snrpn | small nuclear ribonucleopro... | NM_001349692.1 | 91.5% | 100% | (many diffs) |
| 26 | mouse | 20646 | Snrpn | small nuclear ribonucleopro... | NM_001349693.1 | 91.5% | 100% | (many diffs) |
| 27 | mouse | 20646 | Snrpn | small nuclear ribonucleopro... | NM_001349694.1 | 91.5% | 100% | (many diffs) |
| 28 | mouse | 20646 | Snrpn | small nuclear ribonucleopro... | NM_001349695.1 | 91.5% | 100% | (many diffs) |
| 29 | mouse | 20646 | Snrpn | small nuclear ribonucleopro... | NM_013670.4 | 91.5% | 100% | (many diffs) |
| 30 | mouse | 20638 | Snrpb | small nuclear ribonucleopro... | NM_009225.2 | 78.4% | 88.7% | (many diffs) |
| 31 | mouse | 52480 | Snhg14 | small nucleolar RNA host ge... | NR_146211.1 | 2.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 786
- ORF length:
- 720
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGAC TGTTGGCAAG AGTAGCAAGA TGCTGCAGCA CATTGACTAT AGAATGAGAT 121 GTATCCTGCA AGATGGCCGA ATCTTCATTG GCACCTTTAA GGCTTTTGAC AAGCATATGA 181 ATTTGATCCT CTGTGATTGT GATGAGTTCA GAAAGATCAA GCCAAAGAAT GCGAAGCAAC 241 CAGAGCGTGA AGAAAAGCGG GTTTTGGGTC TGGTGTTGCT GCGTGGGGAG AACTTGGTAT 301 CCATGACTGT GGAGGGGCCA CCCCCCAAAG ATACTGGCAT TGCTCGGGTA CCACTTGCTG 361 GAGCTGCTGG AGGCCCTGGG GTTGGTAGGG CAGCTGGTAG AGGAGTACCA GCTGGTGTGC 421 CAATTCCCCA GGCCCCTGCT GGATTGGCAG GCCCTGTCCG AGGAGTTGGG GGACCATCCC 481 AGCAGGTAAT GACTCCACAG GGAAGAGGCA CTGTAGCAGC TGCTGCTGTT GCTGCGACTG 541 CCAGTATTGC TGGAGCCCCA ACACAGTACC CACCAGGACG GGGCACTCCG CCCCCACCCG 601 TCGGCAGAGC AACCCCACCT CCAGGCATTA TGGCTCCTCC ACCTGGTATG AGACCACCCA 661 TGGGCCCACC AATTGGGCTT CCCCCTGCTC GAGGGACGCC AATAGGCATG CCGCCTCCGG 721 GAATGAGACC CCCTCCACCA GGCATTAGAG GTCCACCTCC CCCAGGAATG CGTCCACCAA 781 GACCTTACCC AACTTTCTTG TACAAAGTtg gcattataag aaagcattgc ttatcaattt 841 gttgcaacga ac