Construct: ORF ccsbBroadEn_02343
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006080.1_s300c1, BRDN0000455547
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- LHFPL2 (10184)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 10184 | LHFPL2 | LHFPL tetraspan subfamily m... | NM_005779.3 | 100% | 100% | |
| 2 | human | 10184 | LHFPL2 | LHFPL tetraspan subfamily m... | XM_006714515.2 | 100% | 100% | |
| 3 | human | 10184 | LHFPL2 | LHFPL tetraspan subfamily m... | XM_024454321.1 | 100% | 100% | |
| 4 | human | 10184 | LHFPL2 | LHFPL tetraspan subfamily m... | XM_024454322.1 | 100% | 100% | |
| 5 | human | 10184 | LHFPL2 | LHFPL tetraspan subfamily m... | XM_024454323.1 | 100% | 100% | |
| 6 | human | 10184 | LHFPL2 | LHFPL tetraspan subfamily m... | XM_024454324.1 | 100% | 100% | |
| 7 | human | 10184 | LHFPL2 | LHFPL tetraspan subfamily m... | XM_024454325.1 | 100% | 100% | |
| 8 | human | 10184 | LHFPL2 | LHFPL tetraspan subfamily m... | XR_948226.2 | 36.6% | 1_626del;1055_1156del;1245_1246ins167 | |
| 9 | mouse | 218454 | Lhfpl2 | lipoma HMGIC fusion partner... | NM_172589.2 | 83.4% | 84.3% | (many diffs) |
| 10 | mouse | 218454 | Lhfpl2 | lipoma HMGIC fusion partner... | XM_011244639.2 | 83.4% | 84.3% | (many diffs) |
| 11 | mouse | 218454 | Lhfpl2 | lipoma HMGIC fusion partner... | XM_011244640.1 | 83.4% | 84.3% | (many diffs) |
| 12 | mouse | 218454 | Lhfpl2 | lipoma HMGIC fusion partner... | XM_011244641.2 | 83.4% | 84.3% | (many diffs) |
| 13 | mouse | 218454 | Lhfpl2 | lipoma HMGIC fusion partner... | XM_011244642.2 | 83.4% | 84.3% | (many diffs) |
| 14 | mouse | 218454 | Lhfpl2 | lipoma HMGIC fusion partner... | XM_011244643.2 | 83.4% | 84.3% | (many diffs) |
| 15 | mouse | 218454 | Lhfpl2 | lipoma HMGIC fusion partner... | XM_011244644.2 | 83.4% | 84.3% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 753
- ORF length:
- 684
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GTGTCATGTC ATTGTCACCT GTCGCTCGAT GCTCTGGACC TTGCTGAGTA 121 TTGTGGTGGC TTTTGCCGAG CTCATTGCCT TCATGAGTGC AGACTGGCTG ATCGGGAAAG 181 CGAGGAGCCG CGGCGGCGTG GAGCCGGCGG GCCCGGGCGG GGGCTCCCCG GAGCCCTACC 241 ACCCCACCCT GGGCATCTAC GCCCGCTGCA TCCGGAACCC AGGGGTGCAG CACTTCCAGC 301 GGGACACGCT GTGCGGGCCC TACGCCGAGA GCTTCGGCGA GATCGCCAGC GGCTTCTGGC 361 AGGCCACAGC TATTTTCCTG GCTGTGGGAA TCTTTATTCT CTGCATGGTG GCCTTGGTGT 421 CCGTCTTCAC CATGTGTGTA CAGAGCATCA TGAAGAAAAG CATCTTCAAT GTCTGTGGGC 481 TGTTGCAAGG AATTGCAGGT CTATTCCTTA TCCTCGGTTT GATACTCTAC CCTGCTGGCT 541 GGGGTTGCCA GAAGGCCATA GACTACTGTG GACATTATGC ATCTGCCTAC AAACCTGGAG 601 ACTGCTCCTT GGGCTGGGCC TTTTATACCG CCATTGGGGG CACAGTCCTC ACTTTCATCT 661 GTGCTGTCTT CTCTGCACAA GCAGAAATTG CAACCTCTAG TGACAAAGTA CAGGAAGAAA 721 TTGAAGAGGG GAAAAATCTG ATCTGCCTCC TTTTGCCAAC TTTCTTGTAC AAAGTTGGca 781 ttataagaaa gcattgctta tcaatttgtt gcaacgaac