Construct: ORF ccsbBroadEn_02688

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF011563.1_s300c1, BRDN0000386532
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
MTF2 (22823)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 22823 MTF2 metal response element bind... NM_001164392.1 100% 100%
2 human 22823 MTF2 metal response element bind... NM_007358.4 90.3% 90.3% 990_1160del
3 human 22823 MTF2 metal response element bind... NM_001164391.1 73.1% 73.1% 0_1ins306;684_854del
4 human 22823 MTF2 metal response element bind... NM_001164393.1 73.1% 73.1% 0_1ins306;684_854del
5 mouse 17765 Mtf2 metal response element bind... NM_013827.3 86.1% 88.1% (many diffs)
6 mouse 17765 Mtf2 metal response element bind... NM_001359088.1 84.4% 86.2% (many diffs)
7 mouse 17765 Mtf2 metal response element bind... XM_011249412.3 84.4% 86.2% (many diffs)
8 mouse 17765 Mtf2 metal response element bind... XM_030254189.1 84.4% 86.2% (many diffs)
9 mouse 17765 Mtf2 metal response element bind... XM_030254190.1 81.7% 83.8% (many diffs)
10 mouse 17765 Mtf2 metal response element bind... NM_001253877.1 69.5% 71.5% (many diffs)
11 mouse 17765 Mtf2 metal response element bind... NM_001253878.1 69.5% 71.5% (many diffs)
12 mouse 17765 Mtf2 metal response element bind... NM_001253879.1 69.5% 71.5% (many diffs)
13 mouse 17765 Mtf2 metal response element bind... NM_001253880.1 69.5% 71.5% (many diffs)
14 mouse 17765 Mtf2 metal response element bind... NM_001359089.1 69.5% 71.5% (many diffs)
15 mouse 17765 Mtf2 metal response element bind... XM_011249416.3 69.5% 71.5% (many diffs)
16 mouse 17765 Mtf2 metal response element bind... XM_030254191.1 69.5% 71.5% (many diffs)
17 mouse 17765 Mtf2 metal response element bind... XM_030254192.1 69.5% 71.5% (many diffs)
18 mouse 17765 Mtf2 metal response element bind... XM_030254193.1 69.5% 71.5% (many diffs)
19 mouse 17765 Mtf2 metal response element bind... XM_030254194.1 69.5% 71.5% (many diffs)
20 mouse 17765 Mtf2 metal response element bind... XM_030254195.1 69.5% 71.5% (many diffs)
21 mouse 17765 Mtf2 metal response element bind... XR_389261.4 64.3% (many diffs)
22 mouse 17765 Mtf2 metal response element bind... XM_030254196.1 61.7% 61.7% (many diffs)
23 mouse 17765 Mtf2 metal response element bind... XM_011249417.3 60.4% 60.1% (many diffs)
24 mouse 17765 Mtf2 metal response element bind... NR_152817.1 32.4% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1674
ORF length:
1608
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGAG AGACTCTACA GGGGCAGGTA ATTCACTGGT CCACAAGCGG TCTCCTTTAC
121GTCGAAACCA AAAGACCCCA ACATCCTTGA CCAAGCTGTC TTTACAGGAT GGACATAAAG
181CCAAAAAGCC AGCATGTAAA TTTGAAGAGG GTCAGGATGT CCTAGCTAGA TGGTCAGATG
241GCTTGTTTTA TCTTGGCACT ATCAAAAAGA TAAACATATT GAAACAGAGC TGCTTCATCA
301TATTTGAAGA CAGTTCTAAA TCCTGGGTTC TCTGGAAGGA CATTCAAACA GGAGCCACTG
361GAAGTGGGGA AATGGTCTGT ACAATATGTC AAGAAGAGTA TTCAGAAGCT CCCAATGAAA
421TGGTTATATG TGACAAGTGT GGCCAAGGAT ATCATCAGTT GTGTCACACA CCTCATATTG
481ATTCCAGTGT GATTGATTCA GATGAAAAAT GGCTCTGTCG GCAGTGTGTT TTTGCAACAA
541CAACAAAGAG GGGTGGTGCA CTTAAGAAAG GACCAAATGC CAAAGCATTG CAAGTCATGA
601AGCAGACATT ACCCTATAGT GTGGCAGACC TTGAATGGGA TGCAGGTCAT AAAACCAATG
661TCCAGCAGTG TTACTGCTAT TGTGGAGGCC CTGGAGACTG GTATTTGAAG ATGCTACAGT
721GCTGCAAATG TAAGCAGTGG TTTCATGAGG CTTGTGTGCA ATGCCTTCAA AAGCCAATGC
781TATTTGGAGA CAGATTTTAT ACGTTTATAT GCTCTGTCTG CAGTTCTGGA CCAGAATACC
841TCAAACGTCT ACCATTACAG TGGGTAGATA TAGCACACCT ATGCCTTTAC AACCTAAGTG
901TTATTCATAA GAAGAAATAC TTTGATTCTG AACTTGAGCT TATGACATAC ATTAATGAAA
961ACTGGGATAG ATTGCACCCT GGAGAGCTGG CAGACACACC AAAATCTGAA AGATATGAGC
1021ATGTTCTGGA GGCATTAAAT GATTACAAGA CCATGGAAGT AAGCAATGGC ATAGAAAAAA
1081AAGGAAAGAA AAAATCTGTA GGTCGTCCAC CTGGCCCATA TACAAGAAAA ATGATTCAAA
1141AAACTGCTGA GCCACTTTTG GATAAGGAAT CAATTTCAGA GAATCCTACT TTGGATTTAC
1201CTTGTTCTAT AGGGAGAACT GAGGGAACTG CACATTCATC CAATACCTCA GATGTGGATT
1261TCACGGGTGC TTCCAGTGCA AAAGAAACTA CCTCGTCTAG CATTTCCAGG CATTATGGAT
1321TATCTGACTC CAGAAAAAGA ACGCGTACAG GAAGATCTTG GCCTGCTGCA ATACCACATT
1381TGCGGAGAAG AAGAGGTCGT CTTCCAAGAA GAGCACTCCA GACTCAGAAC TCAGAAATTG
1441TAAAAGATGA TGAAGGCAAA GAAGATTATC AGTTTGATGA ACTCAACACA GAGATTCTGA
1501ATAACTTAGC AGATCAGGAG TTACAACTCA ATCATCTAAA GAACTCCATT ACCAGTTATT
1561TTGGTGCTGC AGGTAGAATA GCATGTGGCG AAAAATACCG AGTTTTGGCA CGTCGGGTGA
1621CACTTGATGG AAAGGTGCAG TATCTTGTGG AATGGGAAGG AGCAACTGCA TCCTGCCCAA
1681CTTTCTTGAA CAAAGTtggc attataagaa agcattgctt atcaatttgt tgcaacgaac

Download FASTA (ORF) (Full)