Transcript: Mouse XM_030254196.1

PREDICTED: Mus musculus metal response element binding transcription factor 2 (Mtf2), transcript variant X12, mRNA.

Source:
NCBI, updated 2019-08-08
Taxon:
Mus musculus (mouse)
Gene:
Mtf2 (17765)
Length:
2552
CDS:
302..1366

Additional Resources:

NCBI RefSeq record:
XM_030254196.1
NBCI Gene record:
Mtf2 (17765)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Mouse XM_030254196.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Mouse Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000245034 CCGTTACAGTGGGTAGATATA pLKO_005 1088 CDS 100% 13.200 18.480 N Mtf2 n/a
2 TRCN0000086136 CTACCGTTACAGTGGGTAGAT pLKO.1 1085 CDS 100% 0.495 0.693 N Mtf2 n/a
3 TRCN0000245035 GCATGTTCTGGAGGCATTAAA pLKO_005 1255 CDS 100% 15.000 10.500 N Mtf2 n/a
4 TRCN0000303983 GCATGTTCTGGAGGCATTAAA pLKO_005 1255 CDS 100% 15.000 10.500 N MTF2 n/a
5 TRCN0000245033 GGCCCTGGAGACTGGTATTTA pLKO_005 923 CDS 100% 15.000 10.500 N Mtf2 n/a
6 TRCN0000245032 TCCCAATGAAATGGTTATATG pLKO_005 646 CDS 100% 13.200 9.240 N Mtf2 n/a
7 TRCN0000303915 TCCCAATGAAATGGTTATATG pLKO_005 646 CDS 100% 13.200 9.240 N MTF2 n/a
8 TRCN0000086135 GCGCTTAAGAAAGGACCAAAT pLKO.1 794 CDS 100% 10.800 7.560 N Mtf2 n/a
9 TRCN0000086137 CCACCAAATGTGGCTTTCAAA pLKO.1 2520 3UTR 100% 5.625 3.938 N Mtf2 n/a
10 TRCN0000107683 GTGTGATTGATTCAGATGAAA pLKO.1 723 CDS 100% 5.625 3.938 N MTF2 n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_030254196.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_02688 pDONR223 100% 61.7% 61.7% None (many diffs) n/a
2 ccsbBroad304_02688 pLX_304 0% 61.7% 61.7% V5 (many diffs) n/a
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