Construct: ORF ccsbBroadEn_03496

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003572.1_s300c1, BRDN0000390835
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PARP16 (54956)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 54956 PARP16 poly(ADP-ribose) polymerase... NM_017851.6 100% 100%
2 human 54956 PARP16 poly(ADP-ribose) polymerase... NM_001316943.2 99.6% 99.6% 831_832insAGC
3 human 54956 PARP16 poly(ADP-ribose) polymerase... XM_006720589.3 95.4% 93.8% (many diffs)
4 human 54956 PARP16 poly(ADP-ribose) polymerase... XM_006720590.3 95.1% 93.5% (many diffs)
5 human 54956 PARP16 poly(ADP-ribose) polymerase... XM_006720592.3 94.1% 94.1% 254_255ins57
6 human 54956 PARP16 poly(ADP-ribose) polymerase... XM_017022386.2 93.8% 93.8% 254_255ins57;774_775insAGC
7 human 54956 PARP16 poly(ADP-ribose) polymerase... XM_011521742.3 85.7% 85.7% 173_174ins138
8 human 54956 PARP16 poly(ADP-ribose) polymerase... XM_017022387.2 85.4% 85.4% 173_174ins138;693_694insAGC
9 human 54956 PARP16 poly(ADP-ribose) polymerase... XM_024449969.1 81.3% 80.4% (many diffs)
10 human 54956 PARP16 poly(ADP-ribose) polymerase... XM_017022388.2 78.6% 78.6% 310_311ins207
11 human 54956 PARP16 poly(ADP-ribose) polymerase... XM_017022389.2 78.3% 78.3% 310_311ins207;624_625insAGC
12 human 54956 PARP16 poly(ADP-ribose) polymerase... XM_024449970.1 73.8% 73% (many diffs)
13 human 54956 PARP16 poly(ADP-ribose) polymerase... NM_001316944.2 64% 64% 173_174ins345;486_487insAGC
14 human 54956 PARP16 poly(ADP-ribose) polymerase... XR_001751342.2 61.8% (many diffs)
15 human 54956 PARP16 poly(ADP-ribose) polymerase... XR_001751341.2 57.3% (many diffs)
16 human 54956 PARP16 poly(ADP-ribose) polymerase... XR_429459.3 55.9% (many diffs)
17 human 54956 PARP16 poly(ADP-ribose) polymerase... XR_429460.3 55.8% (many diffs)
18 human 54956 PARP16 poly(ADP-ribose) polymerase... XR_001751343.2 52.1% (many diffs)
19 mouse 214424 Parp16 poly (ADP-ribose) polymeras... NM_177460.4 86.9% 90% (many diffs)
20 mouse 214424 Parp16 poly (ADP-ribose) polymeras... XM_011242702.1 68.1% 69.9% (many diffs)
21 mouse 214424 Parp16 poly (ADP-ribose) polymeras... XM_006511005.1 49.5% 49.2% (many diffs)
22 mouse 214424 Parp16 poly (ADP-ribose) polymeras... XR_870755.2 29% (many diffs)
23 mouse 214424 Parp16 poly (ADP-ribose) polymeras... XR_001778840.1 25.1% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1035
ORF length:
969
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGCA GCCCTCAGGC TGGGCGGCCG CCAGGGAGGC GGCGGGCCGC GACATGCTGG
121CCGCCGACCT CCGGTGCAGC CTCTTCGCCT CGGCCCTGCA GAGCTACAAG CGCGACTCGG
181TGCTGCGGCC CTTCCCCGCG TCCTACGCCC GCGGCGACTG TAAGGACTTT GAAGCCCTGC
241TTGCAGATGC CAGCAAGTTA CCTAACCTGA AAGAACTTCT CCAGTCCTCC GGAGACAACC
301ACAAACGGGC CTGGGACCTG GTGAGCTGGA TTTTATCCTC AAAGGTCCTG ACAATCCACA
361GTGCAGGGAA GGCAGAGTTT GAAAAGATCC AAAAGCTGAC TGGGGCTCCT CACACGCCTG
421TTCCTGCACC GGACTTCCTG TTTGAAATTG AGTACTTTGA CCCAGCCAAC GCCAAATTTT
481ATGAGACCAA AGGAGAACGA GACCTAATCT ATGCATTTCA TGGTAGCCGC CTAGAAAACT
541TCCATTCCAT TATCCACAAT GGCCTGCACT GCCATCTGAA CAAGACATCC TTGTTCGGAG
601AGGGGACCTA CCTCACCAGT GACTTGAGCC TGGCCCTCAT ATACAGCCCC CATGGCCATG
661GGTGGCAGCA CAGCCTCCTC GGCCCCATCC TTAGCTGTGT GGCCGTGTGT GAGGTCATTG
721ACCATCCGGA CGTCAAGTGC CAAACCAAGA AGAAGGATTC CAAGGAGATA GATCGCAGAC
781GAGCGAGAAT CAAACATAGT GAAGGGGGAG ACATCCCTCC CAAGTACTTC GTGGTCACCA
841ATAACCAGCT GCTGCGAGTG AAGTACCTCC TGGTGTATTC ACAGAAGCCA CCCAAGAGCA
901GGGCTTCGAG CCAGCTCTCC TGGTTTTCCA GCCATTGGTT TACCGTCATG ATATCCCTGT
961ATCTGCTGCT GCTGCTCATA GTGAGTGTCA TCAACTCCTC TGCTTTCCAA CACTTTTGGA
1021ATCGTGCGAA AAGATACCCA ACTTTCTTGT ACAAAGTtgg cattataaga aagcattgct
1081tatcaatttg ttgcaacgaa c

Download FASTA (ORF) (Full)

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