Construct: ORF ccsbBroadEn_03676

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF012075.1_s300c1, BRDN0000391911
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
LMO3 (55885)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 55885 LMO3 LIM domain only 3 NM_001001395.2 100% 100%
2 human 55885 LMO3 LIM domain only 3 NM_001243609.1 100% 100%
3 human 55885 LMO3 LIM domain only 3 NM_001243610.1 100% 100%
4 human 55885 LMO3 LIM domain only 3 NM_018640.5 100% 100%
5 human 55885 LMO3 LIM domain only 3 XM_006719110.4 100% 100%
6 human 55885 LMO3 LIM domain only 3 XM_006719111.2 100% 100%
7 human 55885 LMO3 LIM domain only 3 XM_011520762.1 100% 100%
8 human 55885 LMO3 LIM domain only 3 XM_011520763.1 100% 100%
9 human 55885 LMO3 LIM domain only 3 XM_024449058.1 100% 100%
10 human 55885 LMO3 LIM domain only 3 NM_001243611.1 92.9% 92.9% 1_33del
11 human 55885 LMO3 LIM domain only 3 NM_001243612.1 88.9% 88.9% 1_54del
12 human 55885 LMO3 LIM domain only 3 NM_001243613.1 83.3% 77.9% (many diffs)
13 human 4004 LMO1 LIM domain only 1 XM_011520098.2 80% 89.6% (many diffs)
14 human 4004 LMO1 LIM domain only 1 XM_011520099.2 80% 89.6% (many diffs)
15 human 4004 LMO1 LIM domain only 1 NM_001270428.2 74.8% 83.8% (many diffs)
16 human 4004 LMO1 LIM domain only 1 NM_002315.3 74.4% 83.3% (many diffs)
17 human 55885 LMO3 LIM domain only 3 XM_017019643.1 69.4% 54.3% (many diffs)
18 human 4004 LMO1 LIM domain only 1 XM_006718228.3 60.2% 67.3% (many diffs)
19 human 55885 LMO3 LIM domain only 3 NR_045012.1 11.4% 1_354del;560_684del;915_3784del
20 human 55885 LMO3 LIM domain only 3 NR_045014.1 10.4% 1_287del;431_432ins59;664_3533del
21 human 55885 LMO3 LIM domain only 3 NR_045013.1 10.2% 1_354del;498_499ins59;731_3600del
22 mouse 109593 Lmo3 LIM domain only 3 NM_207222.2 93.3% 100% (many diffs)
23 mouse 109593 Lmo3 LIM domain only 3 XM_006505340.1 93.3% 100% (many diffs)
24 mouse 109593 Lmo3 LIM domain only 3 XM_006505341.3 93.3% 100% (many diffs)
25 mouse 109593 Lmo3 LIM domain only 3 XM_006505342.2 93.3% 100% (many diffs)
26 mouse 109593 Lmo3 LIM domain only 3 XM_006505344.3 93.3% 100% (many diffs)
27 mouse 109593 Lmo3 LIM domain only 3 XM_011241131.2 93.3% 100% (many diffs)
28 mouse 109593 Lmo3 LIM domain only 3 XM_011241132.2 93.3% 100% (many diffs)
29 mouse 109593 Lmo3 LIM domain only 3 XM_011241133.2 93.3% 100% (many diffs)
30 mouse 109593 Lmo3 LIM domain only 3 XM_017321313.1 93.3% 100% (many diffs)
31 mouse 109593 Lmo3 LIM domain only 3 XM_006505339.3 86.7% 92.9% (many diffs)
32 mouse 109594 Lmo1 LIM domain only 1 NM_001302206.1 78.7% 89.6% (many diffs)
33 mouse 109594 Lmo1 LIM domain only 1 NM_001302205.1 73.7% 83.8% (many diffs)
34 mouse 109594 Lmo1 LIM domain only 1 NM_057173.3 73.3% 83.3% (many diffs)
35 mouse 109594 Lmo1 LIM domain only 1 XM_006507195.3 73.3% 83.3% (many diffs)
36 mouse 109593 Lmo3 LIM domain only 3 XM_006505343.3 61.5% 64.5% (many diffs)
37 mouse 109593 Lmo3 LIM domain only 3 XR_377405.3 53.2% (many diffs)
38 mouse 109593 Lmo3 LIM domain only 3 XR_868844.2 48.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
501
ORF length:
435
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGCT CTCAGTCCAG CCAGACACCA AGCCGAAAGG TTGTGCTGGC TGCAACCGAA
121AGATCAAGGA CCGGTATCTT CTAAAGGCAC TGGACAAATA CTGGCATGAA GACTGCCTGA
181AGTGTGCCTG CTGTGACTGT CGCTTGGGAG AGGTGGGCTC CACCCTGTAC ACTAAAGCTA
241ATCTTATCCT TTGTCGCAGA GACTATCTGA GGCTCTTTGG TGTAACGGGA AACTGCGCTG
301CCTGTAGTAA GCTCATCCCT GCCTTTGAGA TGGTGATGCG TGCCAAGGAC AATGTTTACC
361ACCTGGACTG CTTTGCATGT CAGCTTTGTA ATCAGAGATT TTGTGTTGGA GACAAATTTT
421TCCTAAAGAA TAACATGATC CTTTGCCAGA CGGACTACGA GGAAGGTTTA ATGAAAGAAG
481GTTATGCACC CCAGGTTCGC TGCCCAACTT TCTTGTACAA AGTtggcatt ataagaaagc
541attgcttatc aatttgttgc aacgaac

Download FASTA (ORF) (Full)