Construct: ORF ccsbBroadEn_03795

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF000777.1_s300c1, BRDN0000389966
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
ADCK1 (57143)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 57143 ADCK1 aarF domain containing kina... NM_020421.4 100% 100%
2 human 57143 ADCK1 aarF domain containing kina... NM_001366485.2 92.5% 92.5% 739_740ins117
3 human 57143 ADCK1 aarF domain containing kina... NM_001366487.2 90.1% 90.1% 856_1026del
4 human 57143 ADCK1 aarF domain containing kina... NM_001366489.2 89.8% 89.8% 419_420ins159
5 human 57143 ADCK1 aarF domain containing kina... NM_001366486.2 87.3% 87.3% 1006_1007ins198
6 human 57143 ADCK1 aarF domain containing kina... NM_001142545.2 86.9% 86.9% 217_218ins204
7 human 57143 ADCK1 aarF domain containing kina... NM_001366488.2 79.9% 79.9% 739_740ins117;889_890ins198
8 human 57143 ADCK1 aarF domain containing kina... NM_001366490.2 75.9% 75.9% 0_1ins378
9 human 57143 ADCK1 aarF domain containing kina... XM_017021476.1 75.9% 75.9% 0_1ins378
10 human 57143 ADCK1 aarF domain containing kina... XM_017021477.1 75.9% 75.9% 0_1ins378
11 human 57143 ADCK1 aarF domain containing kina... XR_001750450.1 56% 1_118del;974_1523del;2238_2801del
12 human 57143 ADCK1 aarF domain containing kina... XM_011536985.1 54.4% 52.3% (many diffs)
13 human 57143 ADCK1 aarF domain containing kina... XM_011536987.2 50.5% 46.3% (many diffs)
14 human 57143 ADCK1 aarF domain containing kina... XM_011536988.2 50.5% 46.3% (many diffs)
15 human 57143 ADCK1 aarF domain containing kina... NR_158988.2 46.8% 1_73del;930_1009del;1723_3348del
16 human 57143 ADCK1 aarF domain containing kina... NR_158989.2 42% 1_73del;929_1387del;2102_3727del
17 human 57143 ADCK1 aarF domain containing kina... NR_158987.2 36.7% (many diffs)
18 mouse 72113 Adck1 aarF domain containing kina... NM_001277296.1 85.4% 88% (many diffs)
19 mouse 72113 Adck1 aarF domain containing kina... NM_001277297.1 85.4% 88% (many diffs)
20 mouse 72113 Adck1 aarF domain containing kina... NM_028105.4 85.4% 88% (many diffs)
21 mouse 72113 Adck1 aarF domain containing kina... XM_006516245.3 77.9% 80.1% (many diffs)
22 mouse 72113 Adck1 aarF domain containing kina... XM_006516246.2 73.7% 75.4% (many diffs)
23 mouse 72113 Adck1 aarF domain containing kina... XM_006516251.2 63.5% 65.5% (many diffs)
24 mouse 72113 Adck1 aarF domain containing kina... XM_006516252.3 63.5% 65.5% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1635
ORF length:
1569
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGGC CAGAAAGGCT CTCAAGCTTG CTTCGTGGAC CAGCATGGCT CTTGCTGCCT
121CTGGCATCTA CTTCTACAGT AACAAGTACT TGGACCCTAA TGACTTTGGC GCTGTCAGGG
181TGGGCAGAGC AGTTGCTACG ACGGCTGTCA TCAGTTACGA CTACCTCACT TCCCTGAAGA
241GTGTCCCTTA TGGCTCAGAG GAGTACTTGC AGCTGAGATC TAAGGTGCAC CTTCGCTCTG
301CCAGGCGTCT CTGTGAGCTC TGCTGTGCCA ACCGGGGCAC CTTCATCAAG GTGGGCCAGC
361ACCTGGGGGC TCTGGACTAC CTGTTGCCAG AGGAGTACAC CAGCACGCTG AAGGTACTGC
421ACAGCCAGGC TCCACAGAGC AGCATGCAAG AGATCCGCCA GGTCATCCGA GAAGATCTGG
481GCAAGGAGAT CCATGATTTG TTCCAGAGCT TCGATGACAC CCCTCTGGGG ACGGCCTCCC
541TGGCCCAGGT CCACAAGGCA GTGCTGCATG ATGGGCGGAC GGTGGCCGTG AAGGTCCAGC
601ACCCAAAGGT GCGGGCTCAG AGCTCGAAGG ACATTCTCCT GATGGAGGTG CTCGTTCTGG
661CTGTGAAGCA GCTGTTCCCA GAGTTTGAGT TTATGTGGCT TGTGGATGAA GCCAAGAAGA
721ACCTGCCTTT GGAGCTGGAT TTCCTCAATG AAGGGAGGAA TGCTGAGAAG GTGTCCCAGA
781TGCTCAGGCA TTTTGACTTC TTGAAGGTCC CCCGAATCCA CTGGGACCTG TCCACGGAGC
841GGGTCCTCCT GATGGAGTTT GTGGATGGCG GGCAGGTCAA TGACAGAGAC TACATGGAGA
901GGAACAAGAT CGACGTCAAT GAGATCTCAC GCCACCTGGG CAAGATGTAT AGTGAGATGA
961TCTTCGTCAA TGGCTTCGTG CACTGCGATC CCCACCCCGG CAATGTACTG GTGCGGAAGC
1021ACCCCGGCAC GGGAAAGGCG GAGATTGTCC TGTTGGACCA TGGGCTTTAC CAGATGCTCA
1081CGGAAGAATT CCGCCTGAAT TACTGCCACC TCTGGCAGTC TCTGATCTGG ACTGACATGA
1141AGAGAGTGAA GGAGTACAGC CAGCGACTGG GAGCCGGGGA TCTCTACCCC TTGTTTGCCT
1201GCATGCTGAC GGCGCGATCG TGGGACTCGG TCAACAGAGG CATCAGCCAA GCTCCCGTCA
1261CTGCCACTGA GGACTTAGAG ATTCGCAACA ACGCGGCCAA CTACCTCCCC CAGATCAGCC
1321ATCTCCTCAA CCACGTGCCG CGCCAGATGC TGCTCATCTT GAAGACCAAC GACCTGCTGC
1381GTGGCATTGA GGCCGCCCTG GGCACCCGCG CCAGCGCCAG CTCCTTTCTC AACATGTCAC
1441GTTGCTGCAT CAGAGCGCTA GCTGAGCACA AGAAGAAGAA TACCTGTTCA TTCTTCAGAA
1501GGACCCAGAT CTCTTTCAGC GAGGCCTTCA ACTTATGGCA GATCAACCTC CATGAGCTCA
1561TCCTGCGTGT GAAGGGGTTG AAGCTGGCTG ACCGGGTCTT GGCCCTAATA TGCTGGCTGT
1621TCCCTGCTCC ACTCTGCTCA ACTTTCTTGT ACAAAGTtgg cattataaga aagcattgct
1681tatcaatttg ttgcaacgaa c

Download FASTA (ORF) (Full)