Construct: ORF ccsbBroadEn_03824
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF009271.1_s300c1, BRDN0000386603
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- STRIP2 (57464)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 57464 | STRIP2 | striatin interacting protein 2 | NM_001134336.2 | 100% | 100% | |
| 2 | human | 57464 | STRIP2 | striatin interacting protein 2 | XM_006716069.3 | 91.5% | 89.6% | (many diffs) |
| 3 | human | 57464 | STRIP2 | striatin interacting protein 2 | NM_020704.3 | 90.5% | 90% | (many diffs) |
| 4 | human | 57464 | STRIP2 | striatin interacting protein 2 | XM_017012470.1 | 87.9% | 86.9% | (many diffs) |
| 5 | human | 57464 | STRIP2 | striatin interacting protein 2 | XR_001744839.2 | 80.8% | (many diffs) | |
| 6 | human | 57464 | STRIP2 | striatin interacting protein 2 | XR_001744840.1 | 72.8% | (many diffs) | |
| 7 | human | 57464 | STRIP2 | striatin interacting protein 2 | XM_011516432.2 | 71.2% | 70.7% | (many diffs) |
| 8 | human | 57464 | STRIP2 | striatin interacting protein 2 | XM_011516435.1 | 68% | 63% | (many diffs) |
| 9 | human | 57464 | STRIP2 | striatin interacting protein 2 | XR_001744841.1 | 67.8% | (many diffs) | |
| 10 | human | 57464 | STRIP2 | striatin interacting protein 2 | XR_927493.1 | 64.7% | 1_40del;1516_1596del;1672_1673ins723 | |
| 11 | human | 57464 | STRIP2 | striatin interacting protein 2 | XM_017012471.1 | 62% | 61.5% | (many diffs) |
| 12 | human | 57464 | STRIP2 | striatin interacting protein 2 | XM_017012472.1 | 53.2% | 49.8% | (many diffs) |
| 13 | mouse | 320609 | Strip2 | striatin interacting protein 2 | XM_006505118.4 | 81.6% | 84.3% | (many diffs) |
| 14 | mouse | 320609 | Strip2 | striatin interacting protein 2 | NM_177204.3 | 80.9% | 85% | (many diffs) |
| 15 | mouse | 320609 | Strip2 | striatin interacting protein 2 | NM_001037740.1 | 78% | 81.7% | (many diffs) |
| 16 | mouse | 320609 | Strip2 | striatin interacting protein 2 | XM_011241067.2 | 77.7% | 80.9% | (many diffs) |
| 17 | mouse | 320609 | Strip2 | striatin interacting protein 2 | XM_011241068.2 | 77.7% | 80.9% | (many diffs) |
| 18 | mouse | 320609 | Strip2 | striatin interacting protein 2 | XM_030255461.1 | 70.5% | 74.9% | (many diffs) |
| 19 | mouse | 320609 | Strip2 | striatin interacting protein 2 | XM_011241069.1 | 62.8% | 60.7% | (many diffs) |
| 20 | mouse | 320609 | Strip2 | striatin interacting protein 2 | NR_104576.1 | 38% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 2340
- ORF length:
- 2274
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG 61 TTGGCATGGA GGACCCCGCC GCGCCTGGGA CCGGGGGCCC GCCCGCAAAT GGCAATGGCA 121 ACGGCGGCGG CAAAGGGAAG CAGGCGGCGC CCAAGGGCCG CGAAGCGTTC CGAAGCCAGC 181 GGCGGGAGTC AGAGGGCTCT GTGGACTGTC CCACTCTGGA GTTTGAGTAT GGAGATGCAG 241 ATGGGCATGC AGCCGAGTTG TCAGAATTGT ATAGTTACAC TGAGAACCTG GAATTCACCA 301 ATAACAGGAG GTGCTTTGAA GAAGATTTCA AGACTCAAGT GCAGGGCAAG GAATGGCTGG 361 AGTTGGAAGA AGATGCCCAA AAGGCCTATA TAATGGGACT CTTGGACCGG CTAGAGGTGG 421 TCAGTAGGGA ACGGCGGCTG AAGGTGGCCC GGGCTGTTCT CTACCTGGCC CAAGGTACTT 481 TTGGGGAATG TGATTCAGAG GTCGATGTGC TACACTGGTC CAGGTACAAC TGCTTCCTGC 541 TGTATCAGAT GGGGACCTTC TCCACCTTCC TGGAGCTACT CCACATGGAA ATTGACAACA 601 GCCAGGCCTG TAGCAGTGCC CTTCGGAAAC CAGCTGTCTC CATAGCTGAT AGCACAGAGC 661 TCAGGGTGCT GCTGAGTGTT ATGTACCTAA TGGTGGAAAA TATTCGCCTG GAGCGAGAGA 721 CAGACCCCTG TGGGTGGAGA ACAGCCCGGG AGACCTTCCG CACTGAATTA AGCTTCTCCA 781 TGCATAATGA GGAGCCTTTT GCCCTTTTAC TCTTCTCCAT GGTTACCAAG TTCTGCAGTG 841 GCCTGGCTCC TCACTTCCCC ATAAAGAAGG TCCTGCTCCT GCTCTGGAAG GTGGTCATGT 901 TTACCCTCGG TGGATTTGAG CATCTGCAGA CTCTCAAAGT ACAGAAGCGG GCAGAATTGG 961 GCCTGCCTCC ACTGGCTGAA GACAGTATCC AGGTGGTGAA GAGCATGCGT GCTGCCTCCC 1021 CGCCCTCTTA CACTCTTGAC CTGGGAGAGT CTCAGCTGGC ACCCCCACCC TCCAAGCTGC 1081 GAGGCCGCCG TGGCTCTCGA AGGCAACTCC TCACTAAGCA GGACAGCCTG GACATCTACA 1141 ATGAAAGGGA TCTCTTCAAG ACTGAGGAGC CCGCCACAGA GGAGGAAGAG GAGTCTGCTG 1201 GTGATGGAGA ACGAACCTTG GATGGAGAGC TAGACCTGCT AGAGCAGGAC CCTCTGGTGC 1261 CACCTCCACC CTCACAGGCA CCCCTCTCTG CTGAGCGGGT GGCTTTTCCC AAGGGCCTGC 1321 CCTGGGCCCC AAAGGTCAGA CAGAAGGACA TTGAGCACTT CTTGGAGATG AGCAGGAACA 1381 AGTTCATCGG ATTCACCCTG GGGCAGGACA CAGATACATT GGTTGGATTA CCCAGGCCCA 1441 TCCATGAGAG TGTGAAGACC CTAAAGCAGC ACAAGTATAT CTCCATCGCA GATGTGCAGA 1501 TCAAGAATGA AGAGGAGCTG GAGAAGTGCC CTATGTCTTT GGGGGAAGAG GTGGTACCAG 1561 AGACGCCATG TGAAATCCTC TACCAGGGAA TGCTGTACAG CCTTCCGCAG TATATGATCG 1621 CTCTGCTTAA GATTCTGCTG GCTGCAGCTC CCACCTCTAA GGCTAAGACA GACTCTATCA 1681 ATATCCTGGC AGATGTCCTA CCTGAGGAGA TGCCCATCAC TGTTCTCCAG AGCATGAAGC 1741 TGGGCATCGA TGTGAACAGG CACAAGGAGA TTATTGTAAA GAGTATCTCT ACCCTGCTTC 1801 TGCTACTCCT CAAACACTTC AAACTCAACC ATATCTACCA GTTTGAATAT GTATCGCAAC 1861 ATTTGGTATT TGCCAACTGC ATCCCCTTGA TCCTGAAGTT CTTCAATCAA AATATCTTGT 1921 CATACATCAC TGCCAAAAAC AGCATCTCAG TCCTGGATTA TCCTTGCTGT ACCATCCAGG 1981 ATTTGCCGGA GCTTACTACT GAAAGTCTGG AAGCTGGAGA CAACAGCCAG TTCTGCTGGA 2041 GGAACCTCTT TTCCTGCATC AACCTCCTGA GGCTGCTCAA TAAACTGACC AAATGGAAAC 2101 ATTCCCGGAC CATGATGCTG GTAGTGTTTA AATCGGCACC AATCTTAAAG CGGGCCCTCA 2161 AGGTCAAACA GGCCATGCTG CAACTTTATG TCCTAAAGCT ACTAAAGTTA CAGACCAAGT 2221 ACCTGGGGCG CCAATGGAGG AAAAGCAACA TGAAAACCAT GTCAGCCATT TACCAGAAAG 2281 TGCGTCACCG CATGAACGAT GACTGGGCTT ACGGGAATGG TGAGTCTTCC CAAAGCTCTT 2341 GCCCAACTTT CTTGTACAAA GTtggcatta taagaaagca ttgcttatca atttgttgca 2401 acgaac