Construct: ORF ccsbBroadEn_04216

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF003233.1_s300c1, BRDN0000398464
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
PBX4 (80714)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 80714 PBX4 PBX homeobox 4 NM_025245.3 100% 100%
2 human 80714 PBX4 PBX homeobox 4 XM_011528320.3 95.6% 95.3% 194_244del
3 human 80714 PBX4 PBX homeobox 4 XM_017027326.1 86.7% 86.1% (many diffs)
4 human 80714 PBX4 PBX homeobox 4 XM_017027327.1 83.3% 83.1% 0_1ins144;50_100del
5 human 80714 PBX4 PBX homeobox 4 XR_001753767.2 79.1% (many diffs)
6 human 80714 PBX4 PBX homeobox 4 XM_006722911.3 77% 77% 0_1ins258
7 human 80714 PBX4 PBX homeobox 4 XM_011528322.2 77% 77% 0_1ins258
8 human 80714 PBX4 PBX homeobox 4 NR_038198.2 68.2% 1_58del;395_396ins101;1080_1394del
9 human 80714 PBX4 PBX homeobox 4 XM_017027329.2 55.8% 55.8% 0_1ins495
10 human 80714 PBX4 PBX homeobox 4 XM_017027330.2 36.4% 31.6% (many diffs)
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1191
ORF length:
1122
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GGCCGCCCCG CCGCGCCCCG CGCCATCGCC CCCCGCCCCG CGGCGCCTCG
121ACACGAGCGA CGTCCTGCAG CAGATCATGG CCATCACCGA CCAGAGCCTG GACGAGGCAC
181AGGCCAGAAA GCATGCTCTG AATTGCCATC GGATGAAGCC TGCTCTGTTC AGCGTGCTCT
241GTGAGATCAA GGAAAAGACA GTGGTAAGCA TCCGTGGCAT TCAAGACGAA GATCCCCCTG
301ACGCCCAGCT CCTGAGGCTG GATAACATGC TGCTGGCTGA GGGCGTGTGC AGGCCCGAGA
361AGAGAGGAAG AGGAGGAGCG GTGGCCAGGG CCGGCACAGC AACACCAGGT GGCTGTCCAA
421ATGACAATAG CATTGAGCAC TCTGACTACA GGGCCAAGCT GTCCCAGATC CGACAGATTT
481ACCACTCTGA GCTAGAGAAA TATGAACAGG CCTGTCGTGA GTTCACCACG CACGTCACCA
541ACCTCCTCCA GGAGCAGAGC AGGATGAGGC CTGTCTCCCC TAAGGAGATT GAGCGCATGG
601TCGGCGCCAT TCACGGCAAG TTCAGCGCCA TCCAGATGCA GTTGAAGCAG AGCACCTGTG
661AGGCAGTGAT GACCCTGCGT TCGCGGCTGC TCGATGCCAG GCGCAAGCGG CGGAATTTCA
721GCAAGCAGGC GACGGAAGTG CTGAATGAGT ATTTTTACTC CCATCTGAAC AACCCTTACC
781CCAGCGAAGA AGCCAAAGAA GAGCTGGCCA GGAAGGGCGG CCTCACCATC TCCCAGGTCT
841CTAACTGGTT TGGCAACAAA AGAATCCGGT ATAAAAAGAA CATGGGGAAG TTTCAAGAAG
901AGGCTACCAT TTACACGGGT AAAACGGCTG TGGATACCAC GGAAGTTGGG GTCCCAGGGA
961ACCACGCCAG CTGCCTGTCA ACACCTAGCT CCGGCTCCTC TGGACCCTTC CCGCTGCCCA
1021GCGCTGGGGA CGCCTTCCTC ACCCTGCGGA CTCTGGCCTC TCTCCAGCCT CCTCCTGGGG
1081GAGGCTGCCT GCAGTCCCAG GCCCAGGGTA GCTGGCAGGG GGCCACCCCC CAACCTGCAA
1141CTGCCTCACC TGCTGGAGAC CCTGGCAGCA TCAACTCCAG TACATCTAAT TTGCCAACTT
1201TCTTGTACAA AGTtggcatt ataagaaagc attgcttatc aatttgttgc aacgaac

Download FASTA (ORF) (Full)