Construct: ORF ccsbBroadEn_04673

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF001510.1_s300c1, BRDN0000389449
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
WDR31 (114987)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 114987 WDR31 WD repeat domain 31 NM_145241.5 100% 100%
2 human 114987 WDR31 WD repeat domain 31 NM_001012361.4 99.7% 99.7% 116_118delGCA
3 human 114987 WDR31 WD repeat domain 31 XM_011518194.2 92.9% 92.9% 116_118delGCA;246_247ins75
4 human 114987 WDR31 WD repeat domain 31 NM_001006615.3 66.1% 66.1% 0_1ins372
5 human 114987 WDR31 WD repeat domain 31 NR_134677.2 20.9% (many diffs)
6 mouse 71354 Wdr31 WD repeat domain 31 NM_001290522.1 85.1% 83% (many diffs)
7 mouse 71354 Wdr31 WD repeat domain 31 NM_001290521.1 84.9% 82.8% (many diffs)
8 mouse 71354 Wdr31 WD repeat domain 31 NM_023597.2 84.9% 82.8% (many diffs)
9 mouse 71354 Wdr31 WD repeat domain 31 XM_006538254.2 84.9% 82.8% (many diffs)
10 mouse 71354 Wdr31 WD repeat domain 31 XR_390342.3 43.8% (many diffs)
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Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
66
ORF end:
1164
ORF length:
1098
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaaCTTTG TACAAAAAAG
61TTGGCATGCT GCTACTCAGG TGCCAACTGA AACAAGCTCC TCCACAGAAG GTTTCGTTTA
121GGTTTTGTGT CGTGATGGGG AAACAGCAAA GCAAACTCAA ACACAGCACT TATAAATACG
181GGCCTGATGA AATTATAGAA GAGAGAATTC AAACTAAAGC TTTTCAAGAG TATAGCCCAG
241CTCACATGGA TACCGTCTCT GTCGTGGCTG CTTTGAACTC AGACCTTTGT GTCTCTGGAG
301GGAAAGATAA GACAGTTGTG GCCTATAATT GGAAAACTGG AAATGTGGTG AAAAGGTTCA
361AAGGACATGA ACATGAGATC ACCAAGGTAG CCTGTATTCC CAAATCCAGC CAGTTCTTCA
421GTGCCTCTCG TGACAGGATG GTCATGATGT GGGACTTGCA CGGTTCCTCA CAACCAAGGC
481AGCAATTGTG TGGCCATGCC ATGGTGGTCA CCGGATTGGC TGTGAGTCCA GACTCATCAC
541AGCTGTGCAC TGGCTCTCGG GACAACACCC TGCTTCTGTG GGATGTGGTG ACAGGACAGA
601GTGTGGAAAG AGCATCTGTC TCCAGGAACG TGGTCACTCA CCTGTGCTGG GTCCCCAGAG
661AACCATACAT ACTACAGACC TCTGAAGATA AAACCCTCAG ATTATGGGAC AGTCGGGGGC
721TGCAGGTAGC TCATATGTTT CCTGCAAAGC AGCACATTCA GACCTACTGT GAAGTCAGTG
781TGGATGGACA CAAGTGTATC TCCTGCAGCA ATGGCTTTGG AGGAGAAGGC TGTGAAGCCA
841CGTTGTGGGA CCTAAGACAG ACTCGAAACA GAATATGTGA GTATAAGGGG CATTTCCAGA
901CTGTCGCATC CTGCGTCTTT CTACCAAGAG CATTGGCCTT GATGCCTTTA ATTGCTACCT
961CATCACATGA TTGCAAGGTG AAGATTTGGA ACCAAGATAC TGGAGCCTGC CTTTTCACCT
1021TGTCTCTGGA TGGATCAGGA CCCTTGACTT CTCTGGCTGT TGGTGACGCC ATCTCCTTAT
1081TGTGTGCAAG TTTTAACAGA GGAATTCACT TACTCAGAAT GGACCACAGC CAAGGGCTGG
1141AACTGCAGGA AGTGGCAGCA TTCTGCCCAA CTTTCTTGTA CAAAGTtggc attataagaa
1201agcattgctt atcaatttgt tgcaacgaac

Download FASTA (ORF) (Full)