Construct: ORF ccsbBroadEn_05129

Construct Description:

Construct Type:
ORF
Other Identifiers:
ORF006001.1_s300c1, BRDN0000456959
DNA Barcode:
None
Epitope Tag:
None
Notes:
No stop codon in insert

Originally Annotated References:

Gene:
IFNLR1 (163702)

Vector Information:

Vector Backbone:
pDONR223
Pol II Cassette 1:
n/a
Pol II Cassette 2:
n/a
Selection Marker:
n/a
Visible Reporter:
n/a
Epitope Tag:
n/a

Current transcripts matched by this ORF:

Taxon Gene Symbol Description Transcript Nuc. Match %[?] Prot. Match %[?] Match Diffs[?]
1 human 163702 IFNLR1 interferon lambda receptor 1 NM_170743.4 100% 100%
2 human 163702 IFNLR1 interferon lambda receptor 1 NM_173064.3 94.4% 94.4% 800_801ins87
3 human 163702 IFNLR1 interferon lambda receptor 1 XM_006710394.4 91.5% 89.1% (many diffs)
4 human 163702 IFNLR1 interferon lambda receptor 1 XM_017000479.1 84% 84% 0_1ins249
5 human 163702 IFNLR1 interferon lambda receptor 1 XM_024453668.1 61.3% 52.5% 0_1ins472;197_198ins131
6 human 163702 IFNLR1 interferon lambda receptor 1 NM_173065.3 46.9% 43.9% 669_670ins131;732_733ins697
Download CSV

Sequence Information

Note: uppercase bases indicate empirically verified sequence.

ORF start:
69
ORF end:
1629
ORF length:
1560
Sequence:
1gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG
61TTGGCACCAT GGCGGGGCCC GAGCGCTGGG GCCCCCTGCT CCTGTGCCTG CTGCAGGCCG
121CTCCAGGGAG GCCCCGTCTG GCCCCTCCCC AGAATGTGAC GCTGCTCTCC CAGAACTTCA
181GCGTGTACCT GACATGGCTC CCAGGGCTTG GCAACCCCCA GGATGTGACC TATTTTGTGG
241CCTATCAGAG CTCTCCCACC CGTAGACGGT GGCGCGAAGT GGAAGAGTGT GCGGGAACCA
301AGGAGCTGCT ATGTTCTATG ATGTGCCTGA AGAAACAGGA CCTGTACAAC AAGTTCAAGG
361GACGCGTGCG GACGGTTTCT CCCAGCTCCA AGTCCCCCTG GGTGGAGTCC GAATACCTGG
421ATTACCTTTT TGAAGTGGAG CCGGCCCCAC CTGTCCTGGT GCTCACCCAG ACGGAGGAGA
481TCCTGAGTGC CAATGCCACG TACCAGCTGC CCCCCTGCAT GCCCCCACTG GATCTGAAGT
541ATGAGGTGGC ATTCTGGAAG GAGGGGGCCG GAAACAAGAC CCTATTTCCA GTCACTCCCC
601ATGGCCAGCC AGTCCAGATC ACTCTCCAGC CAGCTGCCAG CGAACACCAC TGCCTCAGTG
661CCAGAACCAT CTACACGTTC AGTGTCCCGA AATACAGCAA GTTCTCTAAG CCCACCTGCT
721TCTTGCTGGA GGTCCCAGAA GCCAACTGGG CTTTCCTGGT GCTGCCATCG CTTCTGATAC
781TGCTGTTAGT AATTGCCGCA GGGGGTGTGA TCTGGAAGAC CCTCATGGGG AACCCCTGGT
841TTCAGCGGGC AAAGATGCCA CGGGCCCTGG ACTTTTCTGG ACACACACAC CCTGTGGCAA
901CCTTTCAGCC CAGCAGACCA GAGTCCGTGA ATGACTTGTT CCTCTGTCCC CAAAAGGAAC
961TGACCAGAGG GGTCAGGCCG ACGCCTCGAG TCAGGGCCCC AGCCACCCAA CAGACAAGAT
1021GGAAGAAGGA CCTTGCAGAG GACGAAGAGG AGGAGGATGA GGAGGACACA GAAGATGGCG
1081TCAGCTTCCA GCCCTACATT GAACCACCTT CTTTCCTGGG GCAAGAGCAC CAGGCTCCAG
1141GGCACTCGGA GGCTGGTGGG GTGGACTCAG GGAGGCCCAG GGCTCCTCTG GTCCCAAGCG
1201AAGGCTCCTC TGCTTGGGAT TCTTCAGACA GAAGCTGGGC CAGCACTGTG GACTCCTCCT
1261GGGACAGGGC TGGGTCCTCT GGCTATTTGG CTGAGAAGGG GCCAGGCCAA GGGCCGGGTG
1321GGGATGGGCA CCAAGAATCT CTCCCACCAC CTGAATTCTC CAAGGACTCG GGTTTCCTGG
1381AAGAGCTCCC AGAAGATAAC CTCTCCTCCT GGGCCACCTG GGGCACCTTA CCACCGGAGC
1441CGAATCTGGT CCCTGGGGGA CCCCCAGTTT CTCTTCAGAC ACTGACCTTC TGCTGGGAAA
1501GCAGCCCTGA GGAGGAAGAG GAGGCGAGGG AATCAGAAAT TGAGGACAGC GATGCGGGCA
1561GCTGGGGGGC TGAGAGCACC CAGAGGACCG AGGACAGGGG CCGGACATTG GGGCATTACA
1621TGGCCAGGTT GCCAACTTTC TTGTACAAAG TTGGcattat aagaaagcat tgcttatcaa
1681tttgttgcaa cgaac

Download FASTA (ORF) (Full)