Construct: ORF ccsbBroadEn_05129
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF006001.1_s300c1, BRDN0000456959
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- IFNLR1 (163702)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 163702 | IFNLR1 | interferon lambda receptor 1 | NM_170743.4 | 100% | 100% | |
| 2 | human | 163702 | IFNLR1 | interferon lambda receptor 1 | NM_173064.3 | 94.4% | 94.4% | 800_801ins87 |
| 3 | human | 163702 | IFNLR1 | interferon lambda receptor 1 | XM_006710394.4 | 91.5% | 89.1% | (many diffs) |
| 4 | human | 163702 | IFNLR1 | interferon lambda receptor 1 | XM_017000479.1 | 84% | 84% | 0_1ins249 |
| 5 | human | 163702 | IFNLR1 | interferon lambda receptor 1 | XM_024453668.1 | 61.3% | 52.5% | 0_1ins472;197_198ins131 |
| 6 | human | 163702 | IFNLR1 | interferon lambda receptor 1 | NM_173065.3 | 46.9% | 43.9% | 669_670ins131;732_733ins697 |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 1629
- ORF length:
- 1560
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GGCGGGGCCC GAGCGCTGGG GCCCCCTGCT CCTGTGCCTG CTGCAGGCCG 121 CTCCAGGGAG GCCCCGTCTG GCCCCTCCCC AGAATGTGAC GCTGCTCTCC CAGAACTTCA 181 GCGTGTACCT GACATGGCTC CCAGGGCTTG GCAACCCCCA GGATGTGACC TATTTTGTGG 241 CCTATCAGAG CTCTCCCACC CGTAGACGGT GGCGCGAAGT GGAAGAGTGT GCGGGAACCA 301 AGGAGCTGCT ATGTTCTATG ATGTGCCTGA AGAAACAGGA CCTGTACAAC AAGTTCAAGG 361 GACGCGTGCG GACGGTTTCT CCCAGCTCCA AGTCCCCCTG GGTGGAGTCC GAATACCTGG 421 ATTACCTTTT TGAAGTGGAG CCGGCCCCAC CTGTCCTGGT GCTCACCCAG ACGGAGGAGA 481 TCCTGAGTGC CAATGCCACG TACCAGCTGC CCCCCTGCAT GCCCCCACTG GATCTGAAGT 541 ATGAGGTGGC ATTCTGGAAG GAGGGGGCCG GAAACAAGAC CCTATTTCCA GTCACTCCCC 601 ATGGCCAGCC AGTCCAGATC ACTCTCCAGC CAGCTGCCAG CGAACACCAC TGCCTCAGTG 661 CCAGAACCAT CTACACGTTC AGTGTCCCGA AATACAGCAA GTTCTCTAAG CCCACCTGCT 721 TCTTGCTGGA GGTCCCAGAA GCCAACTGGG CTTTCCTGGT GCTGCCATCG CTTCTGATAC 781 TGCTGTTAGT AATTGCCGCA GGGGGTGTGA TCTGGAAGAC CCTCATGGGG AACCCCTGGT 841 TTCAGCGGGC AAAGATGCCA CGGGCCCTGG ACTTTTCTGG ACACACACAC CCTGTGGCAA 901 CCTTTCAGCC CAGCAGACCA GAGTCCGTGA ATGACTTGTT CCTCTGTCCC CAAAAGGAAC 961 TGACCAGAGG GGTCAGGCCG ACGCCTCGAG TCAGGGCCCC AGCCACCCAA CAGACAAGAT 1021 GGAAGAAGGA CCTTGCAGAG GACGAAGAGG AGGAGGATGA GGAGGACACA GAAGATGGCG 1081 TCAGCTTCCA GCCCTACATT GAACCACCTT CTTTCCTGGG GCAAGAGCAC CAGGCTCCAG 1141 GGCACTCGGA GGCTGGTGGG GTGGACTCAG GGAGGCCCAG GGCTCCTCTG GTCCCAAGCG 1201 AAGGCTCCTC TGCTTGGGAT TCTTCAGACA GAAGCTGGGC CAGCACTGTG GACTCCTCCT 1261 GGGACAGGGC TGGGTCCTCT GGCTATTTGG CTGAGAAGGG GCCAGGCCAA GGGCCGGGTG 1321 GGGATGGGCA CCAAGAATCT CTCCCACCAC CTGAATTCTC CAAGGACTCG GGTTTCCTGG 1381 AAGAGCTCCC AGAAGATAAC CTCTCCTCCT GGGCCACCTG GGGCACCTTA CCACCGGAGC 1441 CGAATCTGGT CCCTGGGGGA CCCCCAGTTT CTCTTCAGAC ACTGACCTTC TGCTGGGAAA 1501 GCAGCCCTGA GGAGGAAGAG GAGGCGAGGG AATCAGAAAT TGAGGACAGC GATGCGGGCA 1561 GCTGGGGGGC TGAGAGCACC CAGAGGACCG AGGACAGGGG CCGGACATTG GGGCATTACA 1621 TGGCCAGGTT GCCAACTTTC TTGTACAAAG TTGGcattat aagaaagcat tgcttatcaa 1681 tttgttgcaa cgaac