Transcript: Human XM_017000479.1

PREDICTED: Homo sapiens interferon lambda receptor 1 (IFNLR1), transcript variant X2, mRNA.

Source:
NCBI, updated 2019-09-08
Taxon:
Homo sapiens (human)
Gene:
IFNLR1 (163702)
Length:
4593
CDS:
306..1619

Additional Resources:

NCBI RefSeq record:
XM_017000479.1
NBCI Gene record:
IFNLR1 (163702)

sgRNA constructs matching this transcript (CRISPRko, NGG PAM)

This list includes CRISPRko constructs with 100% (20mer + NGG) sequence match to the coding regions of this transcript.

No results found.

shRNA constructs matching this transcript with 100% SDR[?] match

This list includes all shRNAs that have a perfect SDR[?] match to Human XM_017000479.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon).

Clone ID Target Seq Vector Match Position Match Region[?] SDR Match %[?] Intrinsic Score[?] Adjusted Score[?] Matches Other Human Gene?[?] Orig. Target Gene[?] Addgene[?]
1 TRCN0000372651 CTCTTTAGGCTGAGCTATAAG pLKO_005 1813 3UTR 100% 13.200 18.480 N IFNLR1 n/a
2 TRCN0000058989 GCCGGAAACAAGACCCTATTT pLKO.1 555 CDS 100% 13.200 18.480 N IFNLR1 n/a
3 TRCN0000058992 ACACGTTCAGTGTCCCGAAAT pLKO.1 661 CDS 100% 10.800 15.120 N IFNLR1 n/a
4 TRCN0000372650 CCCTAGTTAGGCCCAGATAAA pLKO_005 2100 3UTR 100% 13.200 9.240 N IFNLR1 n/a
5 TRCN0000372589 GGAGGCGAGGGAATCAGAAAT pLKO_005 1508 CDS 100% 13.200 9.240 N IFNLR1 n/a
6 TRCN0000058990 CCAACAGACAAGATGGAAGAA pLKO.1 995 CDS 100% 4.950 3.465 N IFNLR1 n/a
7 TRCN0000058988 CCTACATTGAACCACCTTCTT pLKO.1 1081 CDS 100% 4.950 3.465 N IFNLR1 n/a
8 TRCN0000058991 CTTGGGATTCTTCAGACAGAA pLKO.1 1201 CDS 100% 4.950 3.465 N IFNLR1 n/a
9 TRCN0000008902 CCTCCCAAAGTGTTGGGATTA pLKO.1 5 5UTR 100% 1.080 0.540 Y GPR83 n/a
10 TRCN0000156315 CCTCCCAAAGTGTTGGGATTA pLKO.1 5 5UTR 100% 1.080 0.540 Y MYORG n/a
11 TRCN0000155836 CCCAAAGTGCTGGGATTACAA pLKO.1 4086 3UTR 100% 5.625 2.813 Y KLHL30 n/a
12 TRCN0000141025 CCCAAAGTGCTGGGATTACTT pLKO.1 4086 3UTR 100% 5.625 2.813 Y EID2B n/a
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shRNA constructs with at least a near match to this transcript

This list includes shRNAs that have at least a >84% (16 of 19 bases) SDR[?] match to the transcript XM_017000479.1, regardless of what transcript they were originally designed to target. For example, this list can include shRNAs that were originally designed to target: (i) a different isoform or obsolete version of this transcript (as annotated by NCBI), (ii) a transcript of an orthologous gene (in this collection, generally human-to-mouse or mouse-to-human), or (iii) a transcript of a different gene (from the same or different taxon). NOTE: this download is a superset of the above result set.

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All ORF constructs matching this transcript

Clone ID DNA Barcode Vector Sequenced %[?] Nuc. Match %[?] Prot. Match %[?] Epitope Tag Match Diffs[?] Addgene[?]
1 ccsbBroadEn_05129 pDONR223 100% 84% 84% None 0_1ins249 n/a
2 ccsbBroad304_05129 pLX_304 0% 84% 84% V5 0_1ins249 n/a
3 TRCN0000479920 GAGTGCTCAAGCAACGTTACGTGC pLX_317 15% 84% 84% V5 0_1ins249 n/a
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