Construct: ORF ccsbBroadEn_05736
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF015344.1_s300c1, BRDN0000394517
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- GAGE12B (729428)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 729422 | GAGE12C | G antigen 12C | NM_001098408.1 | 100% | 100% | |
| 2 | human | 729431 | GAGE12E | G antigen 12E | NM_001098418.1 | 100% | 100% | |
| 3 | human | 100132399 | GAGE12D | G antigen 12D | NM_001127199.1 | 100% | 100% | |
| 4 | human | 100008586 | GAGE12F | G antigen 12F | NM_001098405.2 | 99.7% | 99.1% | 148C>T |
| 5 | human | 645073 | GAGE12G | G antigen 12G | NM_001098409.2 | 99.7% | 99.1% | 148C>T |
| 6 | human | 729442 | GAGE12H | G antigen 12H | NM_001098410.1 | 99.7% | 99.1% | 172A>G |
| 7 | human | 729428 | GAGE12B | G antigen 12B | NM_001127345.2 | 99.7% | 99.1% | 148C>T |
| 8 | human | 26748 | GAGE12I | G antigen 12I | NM_001477.1 | 99.7% | 99.1% | 148C>T |
| 9 | human | 2579 | GAGE7 | G antigen 7 | NM_021123.3 | 99.7% | 99.1% | 148C>T |
| 10 | human | 2576 | GAGE4 | G antigen 4 | NM_001474.1 | 99.4% | 98.2% | 148C>T;223G>C |
| 11 | human | 2577 | GAGE5 | G antigen 5 | NM_001475.1 | 99.1% | 97.4% | 67G>A;148C>T;223G>C |
| 12 | human | 2543 | GAGE1 | G antigen 1 | NM_001040663.2 | 98.8% | 97.4% | 148C>T;223G>C;337_338delGGinsAA |
| 13 | human | 729396 | GAGE12J | G antigen 12J | NM_001098406.2 | 98.8% | 97.4% | (many diffs) |
| 14 | human | 2578 | GAGE6 | G antigen 6 | NM_001476.1 | 98.8% | 96.5% | (many diffs) |
| 15 | human | 645051 | GAGE13 | G antigen 13 | NM_001098412.2 | 98.5% | 97.4% | (many diffs) |
| 16 | human | 645037 | GAGE2B | G antigen 2B | NM_001098411.3 | 97.7% | 96.5% | (many diffs) |
| 17 | human | 2574 | GAGE2C | G antigen 2C | NM_001472.2 | 97.7% | 96.5% | (many diffs) |
| 18 | human | 729408 | GAGE2D | G antigen 2D | NM_001098407.1 | 97.4% | 95.7% | (many diffs) |
| 19 | human | 26749 | GAGE2E | G antigen 2E | NM_001127200.3 | 97.4% | 95.7% | (many diffs) |
| 20 | human | 729447 | GAGE2A | G antigen 2A | NM_001127212.1 | 97.4% | 95.7% | (many diffs) |
| 21 | human | 100101629 | GAGE8 | G antigen 8 | NM_012196.1 | 97.4% | 95.7% | (many diffs) |
| 22 | human | 102724473 | GAGE10 | G antigen 10 | NM_001098413.3 | 94.8% | 89.7% | (many diffs) |
| 23 | human | 2543 | GAGE1 | G antigen 1 | XM_011543896.2 | 89.7% | 88.7% | (many diffs) |
| 24 | human | 102724473 | GAGE10 | G antigen 10 | XM_024452325.1 | 80% | 71.7% | (many diffs) |
| 25 | human | 645073 | GAGE12G | G antigen 12G | NM_001354422.1 | 63.8% | 63.2% | 148C>T;202_203ins126 |
| 26 | human | 2543 | GAGE1 | G antigen 1 | NR_102272.1 | 10.7% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 69
- ORF end:
- 420
- ORF length:
- 351
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaacttTG TACAAAAAAG 61 TTGGCACCAT GAGTTGGCGA GGAAGATCGA CCTATTATTG GCCTAGACCA AGGCGCTATG 121 TACAGCCTCC TGAAATGATT GGGCCTATGC GGCCCGAGCA GTTCAGTGAT GAAGTGGAAC 181 CAGCAACACC TGAAGAAGGG GAACCAGCAA CTCAATGTCA GGATCCTGCA GCTGCTCAGG 241 AGGGAGAGGA TGAGGGAGCA TCTGCAGGTC AAGGGCCGAA GCCTGAAGCT CATAGCCAGG 301 AACAGGGTCA CCCACAGACT GGGTGTGAGT GTGAAGATGG TCCTGATGGG CAGGAGATGG 361 ACCCGCCAAA TCCAGAGGAG GTGAAAACGC CTGAAGAAGG TGAAAAGCAA TCACAGTGTT 421 TGCCAACTTT CTTGTACAAA GTtggcatta taagaaagca ttgcttatca atttgttgca 481 acgaac