Construct: ORF ccsbBroadEn_05779
Construct Description:
- Construct Type:
- ORF
- Other Identifiers:
- ORF016215.1_s300c1, BRDN0000391139
- DNA Barcode:
- None
- Epitope Tag:
- None
- Notes:
- No stop codon in insert
Originally Annotated References:
- Gene:
- ADK (132)
Vector Information:
- Vector Backbone:
- pDONR223
- Pol II Cassette 1:
- n/a
- Pol II Cassette 2:
- n/a
- Selection Marker:
- n/a
- Visible Reporter:
- n/a
- Epitope Tag:
- n/a
Current transcripts matched by this ORF:
| Taxon | Gene | Symbol | Description | Transcript | Nuc. Match %[?]A simple nucleotide-based global alignment percentage, calculated as follows: total nt. matches ---------------------------------- aligned length (incl. gaps) |
Prot. Match %[?]A simple amino acid-based global alignment percentage, calculated as follows: total aa. matches ---------------------------------- aligned length (incl. gaps) |
Match Diffs[?]This field may contain sequence annotations in HGVS format. For more information about HGVS annotations, please refer to the HGVS Quick Reference Guide. | |
|---|---|---|---|---|---|---|---|---|
| 1 | human | 132 | ADK | adenosine kinase | NM_001123.3 | 99.9% | 99.7% | 604A>T |
| 2 | human | 132 | ADK | adenosine kinase | NM_006721.4 | 94.8% | 93.9% | (many diffs) |
| 3 | human | 132 | ADK | adenosine kinase | NM_001202449.1 | 94.6% | 94.4% | 89_90ins54;550A>T |
| 4 | human | 132 | ADK | adenosine kinase | NM_001369124.1 | 83.4% | 83.4% | 502_503ins171 |
| 5 | human | 132 | ADK | adenosine kinase | XM_017015699.1 | 83.3% | 76.5% | (many diffs) |
| 6 | human | 132 | ADK | adenosine kinase | XM_017015702.1 | 80.1% | 68.7% | 604A>T;709_710ins115;831_832ins89 |
| 7 | human | 132 | ADK | adenosine kinase | XM_017015698.1 | 79.2% | 75.5% | (many diffs) |
| 8 | human | 132 | ADK | adenosine kinase | NM_001202450.1 | 79.1% | 78.4% | (many diffs) |
| 9 | human | 132 | ADK | adenosine kinase | XM_017015703.2 | 78.1% | 77.9% | 0_1ins225;379A>T |
| 10 | human | 132 | ADK | adenosine kinase | NM_001369123.1 | 76% | 64.4% | (many diffs) |
| 11 | human | 132 | ADK | adenosine kinase | XM_017015706.1 | 65.7% | 64.9% | (many diffs) |
| 12 | human | 132 | ADK | adenosine kinase | XM_017015704.1 | 62.3% | 60.7% | (many diffs) |
| 13 | human | 132 | ADK | adenosine kinase | XM_017015705.1 | 60.4% | 49.3% | (many diffs) |
| 14 | mouse | 11534 | Adk | adenosine kinase | NM_001243041.1 | 89.2% | 91% | (many diffs) |
| 15 | mouse | 11534 | Adk | adenosine kinase | NM_134079.4 | 85% | 86.1% | (many diffs) |
| 16 | mouse | 11534 | Adk | adenosine kinase | XM_006518440.3 | 59% | 56.1% | (many diffs) |
| 17 | mouse | 11534 | Adk | adenosine kinase | XM_006518441.3 | 55.4% | 55.9% | (many diffs) |
Sequence Information
Note: uppercase bases indicate empirically verified sequence.
- ORF start:
- 66
- ORF end:
- 1101
- ORF length:
- 1035
- Sequence:
-
1 gttcgttgca acaaattgat gagcaatgct tttttataat gccaactttg tacaaaaaaG 61 AAGCCATGAC GTCAGTCAGA GAAAATATTC TCTTTGGAAT GGGAAATCCT CTGCTTGACA 121 TCTCTGCTGT AGTGGACAAA GATTTCCTTG ATAAGTATTC TCTGAAACCA AATGACCAAA 181 TCTTGGCTGA AGACAAACAC AAGGAACTGT TTGATGAACT TGTGAAAAAA TTCAAAGTCG 241 AATATCATGC TGGTGGCTCT ACCCAGAATT CAATTAAAGT GGCTCAGTGG ATGATTCAAC 301 AGCCACACAA AGCAGCAACA TTTTTTGGAT GCATTGGGAT AGATAAATTT GGGGAGATCC 361 TGAAGAGAAA AGCTGCTGAA GCCCATGTGG ATGCTCATTA CTACGAGCAG AATGAGCAGC 421 CAACAGGAAC TTGTGCTGCA TGCATCACTG GTGACAACAG GTCCCTCATA GCTAATCTTG 481 CTGCTGCCAA TTGTTATAAA AAGGAAAAAC ATCTTGATCT GGAGAAAAAC TGGATGTTGG 541 TAGAAAAAGC AAGAGTTTGT TATATAGCAG GCTTTTTTCT TACAGTTTCC CCAGAGTCAG 601 TATTAAAGGT GGCTCACCAT GCTTCTGAAA ACAACAGGAT TTTCACTTTG AATCTATCTG 661 CACCGTTTTT TAGCCAGTTC TACAAGGAAT CATTGATGAA AGTTATGCCT TATGTTGATA 721 TACTTTTTGG AAATGAGACA GAAGCTGCCA CTTTTGCTAG AGAGCAAGGC TTTGAGACTA 781 AAGACATTAA AGAGATAGCC AAAAAGACAC AAGCCCTGCC AAAGATGAAC TCAAAGAGGC 841 AGCGAATCGT GATCTTCACC CAAGGGAGAG ATGACACTAT AATGGCTACA GAAAGTGAAG 901 TCACTGCTTT TGCTGTCTTG GATCAAGACC AGAAAGAAAT TATTGATACC AATGGAGCTG 961 GAGATGCATT TGTTGGAGGT TTTCTGTCTC AACTGGTCTC TGACAAGCCT CTGACTGAAT 1021 GTATCCGTGC TGGCCACTAT GCAGCAAGCA TCATAATTAG ACGGACTGGC TGCACCTTTC 1081 CTGAGAAGCC AGACTTCCAC TGcccaactt tcttgtacaa agttggcatt ataagaaagc 1141 attgcttatc aatttgttgc aacgaac